Hg_chrom5_TN10mRNA_10088
Organism: Heterodera glycines Gene Locus: chr5:5732237-5733696 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.13 | 0.377 | 1.104 | 0.14 | 1.215 | 1.142 | 0.868 | 0.607 | 1.799 | 0.93 | 1.104 | 1.429 | 0.675 | 0.545 | 1.074 | 1.157 | 0.863 | 1.288 | 0.311 | 1.31 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.920
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.215
|
0.034
|
0.571
|
0.156
|
0.093
|
0.092
|
0.007
|
0.056
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009689
|
1.000
|
1.000
|
Hsc_gene_6889.t1
|
Hsc_gene_6889.t1
|
— |
O17586.1 Proteasome subunit alpha type-6 [Caenorhabditis elegans]
|
KAF7638150.1 Proteasome subunit alpha type [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0006511|GO:0019773|GO:0051603
|
GO:0005575_0.902|GO:0110165_0.899|GO:0005622_0.848|GO:0005737_0.769|GO:0043226_0.738|GO:0043229_0.732|GO:0016020_0.705|GO:0043227_0.633|GO:0043231_0.623|GO:0008150_0.609|GO:0032991_0.606|GO:1902494_0.533|GO:0140535_0.521|GO:1905368_0.516|GO:1905369_0.515|GO:0000502_0.514
|
IPR000426+9-31+|IPR001353+34-220+|IPR023332+24-240+|IPR029055+1-247_8-246+|IPR050115+8-228+
|
SM00948+9-31+
|
PF00227+34-220+Proteasome_subunit|PF10584+9-31+Proteasome_subunit_A_N-terminal_signature
|
— |
PTHR11599+8-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
247-247
|
1.000
|
1-246
|
8yvg_R
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
27175.030
|
6.275
|
-0.500
|
27.126
|
8.502
|
46.559
|
53.441
|
13.765
|
13.360
|
49.798
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
3099.703
|
2393.211
|
2255.643
|
3479.301
|
3570.354
|
2841.855
|
2271.338
|
2646.227
|
4207.613
|
3108.768
|
3579.702
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.315
|
0.403
|
0.734
|
— |
-0.314
|
-0.313
|
— | — | — | — | — | — | — |
No JSON data available for plots.