Hg_chrom5_TN10mRNA_10090
Organism: Heterodera glycines Gene Locus: chr5:5735073-5735815 Feature type: polypeptideProtein Sequence
Length: 130
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.984 | 0.358 | 0.559 | 1.061 | 0.769 | 1.183 | 0.275 | 1.154 | 0.684 | 1.559 | 1.049 | 1.357 | 1.282 | 1.036 | 2.198 | 0.549 | 1.387 | 1.282 | 1.183 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9497
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.552
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRTVECQRRVTQLKRRAV
|
12-48
|
0.944
|
— | — | — | — |
0.000
|
— | — |
0.558
|
0.395
|
0.078
|
0.564
|
0.110
|
0.033
|
0.061
|
0.223
|
0.160
|
0.334
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000057
|
20.000
|
1.000
|
Hsc_gene_7819.t1
|
— | — | — |
CAD2182925.1 unnamed protein product [Meloidogyne enterolobii]
|
KAH9578727
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-130
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.858
|
15136.870
|
10.788
|
14.500
|
27.692
|
11.538
|
46.154
|
53.846
|
20.000
|
7.692
|
44.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
89.684
|
50.615
|
85.862
|
94.695
|
115.120
|
67.803
|
74.805
|
116.516
|
2.410
|
163.531
|
94.479
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.534
|
0.767
|
0.250
|
— |
-0.750
|
— |
0.675
|
-0.497
|
-6.192
|
5.535
|
— | — | — |
No JSON data available for plots.