SCN Proteipedia

Hg_chrom5_TN10mRNA_10091

Organism: Heterodera glycines Gene Locus: chr5:5737085-5742340 Feature type: polypeptide

Protein Sequence

Length: 1,355

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.832	1.39	0.819	0.789	0.898	1.438	0.677	1.365	0.836	0.848	0.827	1.042	0.882	0.894	1.446	2.045	1.21	0.66	0.284	0.608	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9498	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.828

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	PKYKRRT,RRDYQLKNERKKRSD,RRLTYDGSALSIRIRPKEK	5-26	0.952	62-86	1.000	—	—	0.000	—	—	0.289	0.158	0.038	0.689	0.160	0.139	0.121	0.066	0.450	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001318	1.000	4.000	Hsc_gene_6888.t1;Hsc_gene_6888.t2;Hsc_gene_6888.t3;Hsc_gene_6888.t4	Hsc_gene_6888.t1;Hsc_gene_6888.t2;Hsc_gene_6888.t3;Hsc_gene_6888.t4	—	—	KAF7640295.1 IRS-type PTB domain-containing protein [Meloidogyne graminicola]	No	-0.430

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.967\|GO:0009987_0.927\|GO:0065007_0.921\|GO:0050789_0.917\|GO:0050794_0.907\|GO:0050896_0.842\|GO:0051716_0.808\|GO:0023052_0.774\|GO:0007154_0.768\|GO:0005575_0.764\|GO:0110165_0.763\|GO:0007165_0.759\|GO:0042221_0.723\|GO:1901700_0.698\|GO:0009719_0.697\|GO:0048518_0.696\|GO:0008152_0.692\|GO:0019222_0.692\|GO:0070887_0.692\|GO:1901698_0.687\|GO:0016020_0.686\|GO:0031323_0.686\|GO:0044237_0.686\|GO:0005622_0.685\|GO:0009725_0.684\|GO:0071495_0.684\|GO:1901701_0.681\|GO:0048522_0.680\|GO:0032870_0.675\|GO:1901699_0.675\|GO:0043434_0.674\|GO:0032868_0.670\|GO:0032869_0.670\|GO:0071375_0.670\|GO:0003674_0.649\|GO:0051179_0.643\|GO:0005488_0.624\|GO:0007166_0.602\|GO:0033036_0.586\|GO:0007167_0.571\|GO:0007169_0.565\|GO:0008286_0.559\|GO:0071944_0.559\|GO:0048519_0.557\|GO:0005515_0.556\|GO:0048523_0.543\|GO:0005886_0.529\|GO:0010646_0.513\|GO:0006810_0.507\|GO:0023051_0.507\|GO:0051234_0.507\|GO:0048583_0.506	IPR002404+256-309+\|IPR011993+208-319+	—	PF02174+256-309+PTB_domain_(IRS-1_type)	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	299-528;605-1355	2.000	1-298;529-604	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.965	148819.980	9.398	54.500	25.166	8.339	58.450	41.550	15.277	9.889	56.310

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	1552.371	2927.548	1856.122	1553.941	1385.625	1425.215	1228.927	1962.113	1530.881	1016.152	1236.750

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.886	-1.051	-0.148	-0.197	—	-0.204	0.358	-0.533	—	—	—	—	—

No JSON data available for plots.

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