Hg_chrom5_TN10mRNA_10093
Organism: Heterodera glycines Gene Locus: chr5:5742900-5744196 Feature type: polypeptideProtein Sequence
Length: 288
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.727 | 1.05 | 1.136 | 0.599 | 1.042 | 1.068 | 1.075 | 1.389 | 1.235 | 1.408 | 0.947 | 1.225 | 1.35 | 0.935 | 0.921 | 0.942 | 0.398 | 1.315 | 0.534 | 0.613 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9499
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-27
|
0.945
|
— | — | — | — |
0.000
|
— | — |
0.228
|
0.855
|
0.075
|
0.317
|
0.021
|
0.051
|
0.033
|
0.282
|
0.091
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002219
|
2.000
|
2.000
|
Hsc_gene_6887.t1;Hsc_gene_6887.t2
|
Hsc_gene_6887.t1;Hsc_gene_6887.t2
|
— |
Q3B8E3.1 Phospholysine phosphohistidine inorganic pyrophosphate phosphatase [Xenopus laevis]
|
KAI1723497.1 HAD-hyrolase-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016311|GO:0016791
|
GO:0003674_0.869|GO:0008150_0.684|GO:0003824_0.670|GO:0005575_0.618|GO:0110165_0.613|GO:0009987_0.584|GO:0016787_0.577|GO:0008152_0.568
|
IPR006355+14-275+|IPR006357+17-99+|IPR023214+16-266_90-200+|IPR036412+13-269+
|
— |
PF13242+196-269+HAD-hyrolase-like|PF13344+17-99+Haloacid_dehalogenase-like_hydrolase
|
— |
PTHR19288+12-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-288
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
31752.380
|
6.300
|
-1.000
|
26.042
|
10.417
|
43.750
|
56.250
|
13.542
|
12.500
|
50.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.