Hg_chrom5_TN10mRNA_10094
Organism: Heterodera glycines Gene Locus: chr5:5749136-5760288 Feature type: polypeptideProtein Sequence
Length: 824
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.256 | 0.988 | 0.574 | 0.46 | 0.587 | 1.96 | 0.954 | 2.063 | 0.863 | 0.886 | 0.478 | 1.642 | 0.742 | 1.19 | 1.214 | 1.959 | 0.875 | 0.552 | 0.653 | 0.714 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,RKKK
|
1-81
|
0.939
|
45-85
|
0.998
|
— | — |
0.000
|
— | — |
0.835
|
0.233
|
0.018
|
0.294
|
0.051
|
0.056
|
0.077
|
0.017
|
0.067
|
0.142
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000587
|
5.000
|
2.000
|
Hsc_gene_25692.t2;Hsc_gene_25692.t3
|
Hsc_gene_25692.t1;Hsc_gene_25692.t2;Hsc_gene_25692.t3;Hsc_gene_6883.t1;Hsc_gene_6883.t2;Hsc_gene_6884.t1;Hsc_gene_6884.t2;Hsc_gene_6884.t3;Hsc_gene_6884.t4
|
— |
G5EDS1.1 Paired box protein 6 homolog [Caenorhabditis elegans]
|
KAH7705463.1 Protein VAB-3 a, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.975|GO:0009987_0.920|GO:0032502_0.906|GO:0048856_0.906|GO:0065007_0.885|GO:0050789_0.858|GO:0050794_0.851|GO:0032501_0.848|GO:0005575_0.829|GO:0110165_0.820|GO:0007275_0.793|GO:0005622_0.787|GO:0003674_0.785|GO:0003676_0.785|GO:0005488_0.785|GO:0097159_0.785|GO:0043226_0.775|GO:0043229_0.769|GO:0048513_0.769|GO:0006139_0.760|GO:0008152_0.760|GO:0016070_0.760|GO:0043170_0.760|GO:0044238_0.760|GO:0090304_0.760|GO:0009058_0.759|GO:0009059_0.759|GO:0032774_0.759|GO:0034654_0.759|GO:0044237_0.759|GO:0044249_0.759|GO:0141187_0.759|GO:0019222_0.758|GO:0031323_0.758|GO:0006351_0.757|GO:0010467_0.757|GO:0003677_0.753|GO:0080090_0.751|GO:0019219_0.748|GO:0051252_0.748|GO:0060255_0.748|GO:0043565_0.746|GO:0009889_0.736|GO:0031326_0.736|GO:0003690_0.735|GO:0010556_0.734|GO:0010468_0.731|GO:0006355_0.730|GO:2001141_0.730|GO:1990837_0.721|GO:0009653_0.720|GO:0016020_0.705|GO:0048731_0.705|GO:0030154_0.696|GO:0048869_0.696|GO:0006366_0.672|GO:0000976_0.663|GO:0001067_0.663|GO:0043227_0.657|GO:0048518_0.651|GO:0048522_0.651|GO:0006357_0.650|GO:0005634_0.632|GO:0043231_0.632|GO:0140110_0.613|GO:0009891_0.611|GO:0009893_0.611|GO:0031325_0.611|GO:0031328_0.611|GO:0010604_0.605|GO:0007399_0.602|GO:0045935_0.602|GO:0051254_0.602|GO:0010557_0.598|GO:0003700_0.589|GO:0045893_0.583|GO:1902680_0.583|GO:0045944_0.569|GO:0000977_0.551|GO:0009887_0.543|GO:0009888_0.531|GO:0022008_0.518|GO:0043228_0.514|GO:0043232_0.511
|
IPR001356+473-533_475-537_477-532_477-534+|IPR001523+222-346_222-348_226-241_244-262_264-281_282-299+|IPR009057+224-347_457-534+|IPR017970+508-531+|IPR036388+216-290_291-354+|IPR043182+256-272+|IPR043565+219-708+
|
SM00351+222-346+|SM00389+475-537+
|
PF00046+477-532+Homeodomain|PF00292+222-346+'Paired_box'_domain
|
G3DSA:1.10.10.10:FF:000003+291-354+Paired_box_protein_Pax-6|G3DSA:1.10.10.10:FF:000069+219-290+Paired_box_protein_Pax-6|G3DSA:1.10.10.60:FF:000679+477-536+Homeobox_protein_aristaless
|
PTHR45636+219-708+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
179-242;426-694;801-824
|
3.000
|
1-178;243-425;695-800
|
6pax_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.972
|
88464.440
|
9.764
|
37.000
|
19.903
|
10.073
|
50.850
|
49.150
|
13.228
|
6.675
|
56.432
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1211.953
|
3962.340
|
3514.748
|
1466.944
|
649.125
|
319.578
|
469.752
|
1898.312
|
458.507
|
353.115
|
398.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.402
|
-1.571
|
-1.152
|
-1.208
|
-1.008
|
0.566
|
2.468
|
-1.873
|
— | — | — | — | — |
No JSON data available for plots.