Hg_chrom5_TN10mRNA_10095
Organism: Heterodera glycines Gene Locus: chr5:5756873-5760297 Feature type: polypeptideProtein Sequence
Length: 544
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.389 | 1.069 | 0.501 | 0.063 | 0.674 | 2.215 | 0.919 | 2.39 | 0.49 | 0.82 | 0.418 | 1.838 | 0.868 | 1.555 | 0.975 | 1.786 | 0.994 | 0.585 | 0.424 | 0.649 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRP,KRKL,KRKVLKKR
|
— | — |
10-53
|
0.951
|
— | — |
0.000
|
— | — |
0.907
|
0.169
|
0.009
|
0.343
|
0.048
|
0.050
|
0.056
|
0.006
|
0.043
|
0.048
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000587
|
5.000
|
2.000
|
Hsc_gene_25692.t2;Hsc_gene_25692.t3
|
Hsc_gene_25692.t1;Hsc_gene_25692.t2;Hsc_gene_25692.t3;Hsc_gene_25692.t4;Hsc_gene_6883.t1;Hsc_gene_6883.t2;Hsc_gene_6883.t3
|
— |
P47237.1 Paired box protein Pax-6 [Gallus gallus]
|
KAI1732390.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.948|GO:0009987_0.890|GO:0032502_0.856|GO:0048856_0.856|GO:0032501_0.850|GO:0065007_0.807|GO:0050789_0.804|GO:0050794_0.797|GO:0007275_0.791|GO:0008152_0.732|GO:0019222_0.732|GO:0031323_0.732|GO:0044237_0.732|GO:0044238_0.727|GO:0080090_0.727|GO:0006139_0.726|GO:0016070_0.726|GO:0019219_0.726|GO:0043170_0.726|GO:0051252_0.726|GO:0060255_0.726|GO:0090304_0.726|GO:0005575_0.722|GO:0006351_0.718|GO:0006355_0.718|GO:0009058_0.718|GO:0009059_0.718|GO:0009889_0.718|GO:0010467_0.718|GO:0010468_0.718|GO:0010556_0.718|GO:0031326_0.718|GO:0032774_0.718|GO:0034654_0.718|GO:0044249_0.718|GO:0141187_0.718|GO:2001141_0.718|GO:0003674_0.708|GO:0003676_0.708|GO:0005488_0.708|GO:0048731_0.708|GO:0097159_0.708|GO:0048513_0.703|GO:0003677_0.695|GO:0043565_0.695|GO:0003690_0.694|GO:0110165_0.694|GO:1990837_0.694|GO:0030154_0.676|GO:0048869_0.676|GO:0009653_0.672|GO:0005622_0.668|GO:0043226_0.659|GO:0043229_0.657|GO:0007399_0.654|GO:0000976_0.639|GO:0001067_0.639|GO:0006357_0.614|GO:0006366_0.614|GO:0140110_0.611|GO:0048518_0.602|GO:0048522_0.602|GO:0009891_0.594|GO:0009893_0.594|GO:0031325_0.594|GO:0031328_0.594|GO:0003700_0.589|GO:0010604_0.589|GO:0045935_0.589|GO:0051254_0.589|GO:0016020_0.586|GO:0010557_0.579|GO:1902680_0.579|GO:0045893_0.575|GO:0045944_0.559|GO:0022008_0.556|GO:0043227_0.532|GO:0000977_0.527|GO:0005634_0.521|GO:0043231_0.521|GO:0043228_0.511|GO:0048699_0.506|GO:0043232_0.502
|
IPR001356+193-253_195-257_197-252_197-254+|IPR009057+177-254+|IPR017970+228-251+|IPR043565+151-426+
|
SM00389+195-257+
|
PF00046+197-252+Homeodomain
|
G3DSA:1.10.10.60:FF:000679+197-256+Homeobox_protein_aristaless
|
PTHR45636+151-426+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-414;521-544
|
1.000
|
415-520
|
2cue_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.953
|
58082.130
|
9.316
|
17.000
|
19.118
|
10.662
|
50.919
|
49.081
|
12.316
|
6.801
|
57.721
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1211.953
|
3962.340
|
3514.748
|
1466.944
|
649.125
|
319.578
|
469.752
|
1898.312
|
458.507
|
353.115
|
398.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.402
|
-1.571
|
-1.152
|
-1.208
|
-1.008
|
0.566
|
2.468
|
-1.873
|
— | — | — | — | — |
No JSON data available for plots.