Hg_chrom5_TN10mRNA_10096
Organism: Heterodera glycines Gene Locus: chr5:5756873-5760297 Feature type: polypeptideProtein Sequence
Length: 510
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.436 | 1.003 | 0.535 | 0.068 | 0.621 | 2.313 | 0.887 | 2.549 | 0.479 | 0.848 | 0.297 | 1.845 | 0.817 | 1.546 | 0.92 | 1.905 | 1.029 | 0.505 | 0.452 | 0.692 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL
|
— | — |
10-53
|
0.951
|
— | — |
0.000
|
— | — |
0.866
|
0.204
|
0.008
|
0.358
|
0.064
|
0.060
|
0.076
|
0.005
|
0.053
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000587
|
5.000
|
2.000
|
Hsc_gene_25692.t2;Hsc_gene_25692.t3
|
Hsc_gene_25692.t1;Hsc_gene_25692.t2;Hsc_gene_25692.t3;Hsc_gene_25692.t4;Hsc_gene_6883.t1;Hsc_gene_6883.t2;Hsc_gene_6883.t3
|
— |
G5EDS1.1 Paired box protein 6 homolog [Caenorhabditis elegans]
|
KAI1732390.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.923|GO:0009987_0.865|GO:0032502_0.834|GO:0048856_0.834|GO:0032501_0.829|GO:0065007_0.809|GO:0050789_0.807|GO:0050794_0.800|GO:0007275_0.772|GO:0003674_0.730|GO:0003676_0.730|GO:0005488_0.730|GO:0097159_0.730|GO:0003677_0.727|GO:0043565_0.727|GO:0003690_0.726|GO:1990837_0.726|GO:0005575_0.718|GO:0048731_0.714|GO:0008152_0.711|GO:0019222_0.711|GO:0031323_0.711|GO:0044237_0.711|GO:0048513_0.711|GO:0110165_0.709|GO:0044238_0.708|GO:0080090_0.708|GO:0006139_0.707|GO:0016070_0.707|GO:0019219_0.707|GO:0043170_0.707|GO:0051252_0.707|GO:0060255_0.707|GO:0090304_0.707|GO:0006351_0.702|GO:0006355_0.702|GO:0009058_0.702|GO:0009059_0.702|GO:0009889_0.702|GO:0010467_0.702|GO:0010468_0.702|GO:0010556_0.702|GO:0031326_0.702|GO:0032774_0.702|GO:0034654_0.702|GO:0044249_0.702|GO:0141187_0.702|GO:2001141_0.702|GO:0005622_0.680|GO:0009653_0.678|GO:0043226_0.671|GO:0043229_0.669|GO:0030154_0.652|GO:0048869_0.652|GO:0000976_0.651|GO:0001067_0.651|GO:0007399_0.631|GO:0006357_0.623|GO:0006366_0.623|GO:0140110_0.621|GO:0048518_0.608|GO:0048522_0.608|GO:0016020_0.603|GO:0003700_0.602|GO:0009891_0.602|GO:0009893_0.602|GO:0031325_0.602|GO:0031328_0.602|GO:0010604_0.598|GO:0045935_0.598|GO:0051254_0.598|GO:0010557_0.587|GO:0045893_0.587|GO:1902680_0.587|GO:0045944_0.571|GO:0000977_0.543|GO:0043227_0.543|GO:0005634_0.541|GO:0043231_0.541|GO:0022008_0.534|GO:0043228_0.501
|
IPR001356+159-219_161-223_163-218_163-220+|IPR009057+143-220+|IPR017970+194-217+|IPR043565+101-393+
|
SM00389+161-223+
|
PF00046+163-218+Homeodomain
|
G3DSA:1.10.10.60:FF:000679+163-222+Homeobox_protein_aristaless
|
PTHR45636+101-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-380;487-510
|
1.000
|
381-486
|
2cue_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
54303.690
|
7.643
|
12.000
|
18.235
|
10.980
|
51.176
|
48.824
|
11.569
|
6.667
|
58.235
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1211.953
|
3962.340
|
3514.748
|
1466.944
|
649.125
|
319.578
|
469.752
|
1898.312
|
458.507
|
353.115
|
398.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.402
|
-1.571
|
-1.152
|
-1.208
|
-1.008
|
0.566
|
2.468
|
-1.873
|
— | — | — | — | — |
No JSON data available for plots.