Hg_chrom5_TN10mRNA_10097
Organism: Heterodera glycines Gene Locus: chr5:5757068-5760297 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.447 | 1.128 | 0.499 | 0.073 | 0.738 | 2.11 | 1.03 | 1.793 | 0.516 | 0.77 | 0.479 | 1.737 | 0.586 | 1.461 | 1.119 | 1.658 | 1.072 | 0.671 | 0.487 | 0.683 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9500
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRP,KRKL,KRKVLKKR
|
— | — |
35-78
|
0.986
|
— | — |
0.000
|
— | — |
0.928
|
0.150
|
0.009
|
0.325
|
0.048
|
0.046
|
0.055
|
0.005
|
0.041
|
0.066
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000587
|
5.000
|
2.000
|
Hsc_gene_25692.t2;Hsc_gene_25692.t3
|
Hsc_gene_25692.t1;Hsc_gene_25692.t2;Hsc_gene_25692.t3;Hsc_gene_25692.t4;Hsc_gene_6883.t1;Hsc_gene_6883.t2;Hsc_gene_6883.t3
|
— |
P47237.1 Paired box protein Pax-6 [Gallus gallus]
|
KAI1732390.1 homeobox domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.947|GO:0009987_0.889|GO:0032502_0.855|GO:0048856_0.855|GO:0032501_0.848|GO:0065007_0.806|GO:0050789_0.803|GO:0050794_0.795|GO:0007275_0.789|GO:0008152_0.732|GO:0019222_0.732|GO:0031323_0.732|GO:0044237_0.732|GO:0044238_0.727|GO:0080090_0.727|GO:0006139_0.726|GO:0016070_0.726|GO:0019219_0.726|GO:0043170_0.726|GO:0051252_0.726|GO:0060255_0.726|GO:0090304_0.726|GO:0005575_0.724|GO:0006351_0.719|GO:0006355_0.719|GO:0009058_0.719|GO:0009059_0.719|GO:0009889_0.719|GO:0010467_0.719|GO:0010468_0.719|GO:0010556_0.719|GO:0031326_0.719|GO:0032774_0.719|GO:0034654_0.719|GO:0044249_0.719|GO:0141187_0.719|GO:2001141_0.719|GO:0003674_0.709|GO:0003676_0.709|GO:0005488_0.709|GO:0097159_0.709|GO:0048731_0.707|GO:0048513_0.702|GO:0003677_0.697|GO:0043565_0.697|GO:0110165_0.696|GO:0003690_0.695|GO:1990837_0.695|GO:0030154_0.675|GO:0048869_0.675|GO:0005622_0.672|GO:0009653_0.670|GO:0043226_0.663|GO:0043229_0.661|GO:0007399_0.652|GO:0000976_0.641|GO:0001067_0.641|GO:0006357_0.614|GO:0006366_0.614|GO:0140110_0.611|GO:0048518_0.601|GO:0048522_0.601|GO:0009891_0.595|GO:0009893_0.595|GO:0031325_0.595|GO:0031328_0.595|GO:0003700_0.590|GO:0010604_0.590|GO:0045935_0.590|GO:0051254_0.590|GO:0016020_0.589|GO:0010557_0.580|GO:1902680_0.580|GO:0045893_0.575|GO:0045944_0.560|GO:0022008_0.554|GO:0043227_0.535|GO:0000977_0.528|GO:0005634_0.527|GO:0043231_0.527|GO:0043228_0.519|GO:0043232_0.511|GO:0048699_0.503
|
IPR001356+123-183_125-187_127-182_127-184+|IPR009057+107-184+|IPR017970+158-181+|IPR043565+81-352+
|
SM00389+125-187+
|
PF00046+127-182+Homeodomain
|
G3DSA:1.10.10.60:FF:000679+127-186+Homeobox_protein_aristaless
|
PTHR45636+81-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-344;451-474
|
1.000
|
345-450
|
2cue_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
50261.520
|
9.797
|
15.500
|
19.409
|
8.650
|
50.633
|
49.367
|
12.236
|
7.173
|
59.072
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1211.953
|
3962.340
|
3514.748
|
1466.944
|
649.125
|
319.578
|
469.752
|
1898.312
|
458.507
|
353.115
|
398.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.402
|
-1.571
|
-1.152
|
-1.208
|
-1.008
|
0.566
|
2.468
|
-1.873
|
— | — | — | — | — |
No JSON data available for plots.