Hg_chrom5_TN10mRNA_10099
Organism: Heterodera glycines Gene Locus: chr5:5761917-5764580 Feature type: polypeptideProtein Sequence
Length: 577
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 1.048 | 0.851 | 0.598 | 0.809 | 0.844 | 0.743 | 1.213 | 1.232 | 2.014 | 0.63 | 0.714 | 2.552 | 0.467 | 1.061 | 1.213 | 1.023 | 0.84 | 0.667 | 0.968 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9501
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.943
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole|golgi_apparatus
|
nucleus
|
PKPS
|
— | — | — | — |
1-25
|
0.726
|
0.999
|
7.000
|
7.000
|
0.081
|
0.066
|
0.008
|
0.114
|
0.449
|
0.604
|
0.725
|
0.017
|
0.709
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009690
|
1.000
|
1.000
|
Hsc_gene_6880.t1
|
Hsc_gene_25690.t1;Hsc_gene_6880.t1
|
— |
Q8BUV8.2 Protein GPR107 [Mus musculus]
|
KAI1724222.1 lung seven transmembrane receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.809|GO:0005575_0.785|GO:0110165_0.781|GO:0009987_0.774|GO:0005886_0.764|GO:0016020_0.764|GO:0071944_0.764|GO:0005622_0.642|GO:0043226_0.621|GO:0005737_0.620|GO:0005773_0.611|GO:0043227_0.611|GO:0043229_0.611|GO:0043231_0.611|GO:0012505_0.581|GO:0065007_0.530|GO:0050896_0.507|GO:0050789_0.504
|
IPR009637+13-557+|IPR053937+257-503+|IPR054103+29-122+
|
— |
PF06814+257-503+GOST,_seven_transmembrane_domain|PF21904+29-122+CAND6/7,_N-terminal_domain
|
— |
PTHR21229+13-557+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-577
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.666
|
65582.640
|
7.287
|
6.000
|
21.317
|
15.771
|
43.847
|
56.153
|
11.785
|
9.532
|
45.061
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1748.933
|
2434.932
|
1738.591
|
1537.423
|
1433.492
|
1599.717
|
1396.141
|
1996.029
|
1566.040
|
1925.929
|
1771.691
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.716
|
-0.801
|
— |
-0.133
|
0.173
|
-0.188
|
— |
-0.376
|
— | — | — | — | — |