Hg_chrom5_TN10mRNA_10100
Organism: Heterodera glycines Gene Locus: chr5:5764738-5767029 Feature type: polypeptideProtein Sequence
Length: 545
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.067 | 1.28 | 0.934 | 0.569 | 0.917 | 1.176 | 0.765 | 1.101 | 1.142 | 1.537 | 0.862 | 1.295 | 1.325 | 0.459 | 1.123 | 1.18 | 0.692 | 1.001 | 0.847 | 0.756 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9502
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.839
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.524
|
0.174
|
0.011
|
0.461
|
0.193
|
0.232
|
0.305
|
0.019
|
0.063
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009691
|
1.000
|
1.000
|
Hsc_gene_6879.t1
|
Hsc_gene_6879.t1
|
— |
Q6P2U9.1 COP9 signalosome complex subunit 3 [Danio rerio]
|
KAI1723457.1 COP9 signalosome complex subunit 3 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.798|GO:0005575_0.679|GO:0110165_0.671|GO:0005622_0.599|GO:0016020_0.596|GO:0043226_0.545|GO:0043229_0.545|GO:0009987_0.522|GO:0043227_0.502
|
IPR050756+254-516+
|
— |
PF22788+21-175_254-334+COP9_signalosome_complex_subunit_3,_N-terminal_helical_repeats
|
— |
PTHR10758+254-516+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
510-545
|
1.000
|
1-509
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.740
|
60586.280
|
8.053
|
9.000
|
24.037
|
10.642
|
46.606
|
53.394
|
13.394
|
10.642
|
49.358
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1632.144
|
1367.709
|
1654.149
|
1782.136
|
2071.149
|
2224.134
|
2339.029
|
1980.964
|
1456.285
|
1016.189
|
1204.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.245
|
0.216
|
0.185
|
— | — |
-0.273
|
0.383
|
— | — | — | — | — |
No JSON data available for plots.