SCN Proteipedia

Hg_chrom5_TN10mRNA_10101

Organism: Heterodera glycines Gene Locus: chr5:5767196-5773971 Feature type: polypeptide

Protein Sequence

Length: 1,441

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.783	1.243	1.211	0.287	2.001	1.708	0.529	0.902	1.419	1.341	1.388	1.061	0.733	0.427	1.388	0.744	0.751	0.747	0.32	0.429	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9503	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKKR,KKRK,KRKR,RKRK,PCQKRIK,KKGKLEEQLEAERKKLT,RKKLTEWLSAPEKARAK,RREMQLQRLQHAEREKQK,RKIGEQQQAKVKAANDKKR	—	—	—	—	—	—	0.000	—	—	0.821	0.060	0.006	0.331	0.039	0.104	0.056	0.003	0.080	0.046

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009692	1.000	1.000	Hsc_gene_6878.t1	Hsc_gene_6878.t1	—	Q9ERA5.1 Structural maintenance of chromosomes protein 4 [Microtus arvalis]	KAF7640323.1 Structural maintenance of chromosomes protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005524\|GO:0005694\|GO:0016887\|GO:0051276	GO:0005575_0.874\|GO:0110165_0.870\|GO:0008150_0.855\|GO:0005622_0.848\|GO:0009987_0.818\|GO:0043226_0.735\|GO:0071840_0.727\|GO:0016043_0.714\|GO:0043229_0.713\|GO:0016020_0.691\|GO:0006996_0.613\|GO:0003674_0.611\|GO:0043227_0.599\|GO:0043228_0.597\|GO:0043232_0.596\|GO:0032991_0.586\|GO:0005488_0.570\|GO:0007049_0.556\|GO:0022402_0.556\|GO:0043231_0.552\|GO:0000280_0.510\|GO:0048285_0.510	IPR003395+70-1418+\|IPR010935+599-714_599-715+\|IPR024704+67-852_842-1433+\|IPR027417+68-280_68-1410_1273-1440+\|IPR036277+563-753+	SM00968+599-715+	PF02463+70-1418+RecF/RecN/SMC_N_terminal_domain\|PF06470+599-714+SMC_proteins_Flexible_Hinge_Domain	G3DSA:1.20.1060.20:FF:000003+584-658+Structural_maintenance_of_chromosomes_4\|G3DSA:3.40.50.300:FF:000481+1250-1427+Structural_maintenance_of_chromosomes_4\|G3DSA:3.40.50.300:FF:000585+68-277+Structural_maintenance_of_chromosomes_4	PTHR18937+59-1433+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-62;324-535;739-955;1055-1197;1426-1441	4.000	63-323;536-738;956-1054;1198-1425	9f5w_B	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.676	165554.800	5.283	-26.000	36.433	6.315	58.223	41.777	17.765	18.668	40.944

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	lightcyan	2740.189	3095.636	2523.343	2636.888	3096.206	2242.620	2494.980	2306.509	4087.227	2024.340	2908.434

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.525	-0.369	0.173	0.200	-0.451	—	—	0.256	—	—	—	—	—

No JSON data available for plots.

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