Hg_chrom5_TN10mRNA_10102
Organism: Heterodera glycines Gene Locus: chr5:5774630-5777983 Feature type: polypeptideProtein Sequence
Length: 404
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.604 | 1.036 | 0.945 | 0.427 | 0.866 | 1.015 | 0.501 | 0.866 | 1.045 | 2.007 | 0.788 | 1.31 | 2.819 | 0.714 | 1.111 | 0.99 | 0.649 | 0.825 | 1.904 | 1.092 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9504
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— |
KRSRQKK,RRKKMDELYREEAAMKRSR,RKKMDELYREEAAMKRSRQ,KKMDELYREEAAMKRSRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.309
|
0.189
|
0.030
|
0.298
|
0.787
|
0.220
|
0.399
|
0.014
|
0.099
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003914
|
2.000
|
1.000
|
Hsc_gene_6876.t1
|
Hsc_gene_6876.t1
|
— |
Q7SY06.2 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase [Danio rerio]
|
KAI1706507.1 protein tyrosine phosphatase-like protein, PTPLA domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0008150_0.857|GO:0110165_0.857|GO:0009987_0.832|GO:0005622_0.771|GO:0016020_0.731|GO:0043226_0.687|GO:0043229_0.665|GO:0005886_0.655|GO:0071944_0.655|GO:0005737_0.639|GO:0043227_0.620|GO:0043231_0.603|GO:0005773_0.549|GO:0003674_0.543|GO:0065007_0.531|GO:0012505_0.530|GO:0050789_0.505
|
IPR007052+6-101+|IPR007482+164-393_228-386+|IPR008978+7-138_8-132+
|
— |
PF04387+228-386+Protein_tyrosine_phosphatase-like_protein,_PTPLA
|
— |
PTHR11035+164-393+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-404
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
47474.140
|
7.717
|
4.500
|
22.772
|
18.069
|
42.079
|
57.921
|
12.376
|
10.396
|
40.347
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1385.085
|
1344.162
|
1087.666
|
965.717
|
1027.239
|
986.625
|
1241.627
|
1093.861
|
558.257
|
2735.967
|
1802.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.535
|
-0.614
|
— | — | — |
0.340
|
— |
0.324
|
-2.402
|
— | — | — | — |
No JSON data available for plots.