Hg_chrom5_TN10mRNA_10103
Organism: Heterodera glycines Gene Locus: chr5:5778556-5780209 Feature type: polypeptideProtein Sequence
Length: 269
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.167 | 0.778 | 0.676 | 0.128 | 1.363 | 2.002 | 1.106 | 0.558 | 0.661 | 1.055 | 1.127 | 2.624 | 0.413 | 1.072 | 2.124 | 0.584 | 1.158 | 0.394 | 0.572 | 0.437 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9505
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KVKK,RKRR,FRPVRPHRQLRLRRAPVAPEGGSGGKKARKAR
|
23-59
|
0.898
|
1-21
|
0.994
|
— | — |
0.000
|
— | — |
0.899
|
0.148
|
0.005
|
0.288
|
0.059
|
0.039
|
0.059
|
0.004
|
0.043
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001319
|
2.000
|
3.000
|
Hsc_gene_6875.t1;Hsc_gene_6875.t2;Hsc_gene_6875.t3
|
Hsc_gene_6875.t1;Hsc_gene_6875.t2;Hsc_gene_6875.t3
|
— |
Q22910.2 Homeobox protein ceh-31 [Caenorhabditis elegans]
|
KAH7728865.1 CRE-CEH-31 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0006355
|
GO:0008150_0.831|GO:0009987_0.804|GO:0065007_0.702|GO:0050789_0.684|GO:0032502_0.676|GO:0048856_0.676|GO:0050794_0.670|GO:0005575_0.662|GO:0032501_0.654|GO:0110165_0.633|GO:0007275_0.610|GO:0003674_0.598|GO:0005488_0.598|GO:0048731_0.591|GO:0005622_0.589|GO:0043226_0.573|GO:0043229_0.568|GO:0097159_0.556|GO:0003676_0.543|GO:0008152_0.534|GO:0009058_0.534|GO:0009059_0.534|GO:0010467_0.534|GO:0043170_0.534|GO:0044237_0.534|GO:0044249_0.534|GO:0016020_0.527|GO:0048869_0.516|GO:0030154_0.513|GO:0019222_0.506|GO:0031323_0.506
|
IPR000047+79-88_88-104+|IPR001356+48-108_50-112_51-107_51-109+|IPR009057+45-111+|IPR017970+83-106+|IPR020479+72-83_87-97_97-106+|IPR050848+46-141+
|
SM00389+50-112+
|
PF00046+51-107+Homeodomain
|
— |
PTHR24333+46-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-59;152-269
|
1.000
|
60-151
|
8pna_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.702
|
30023.150
|
10.809
|
17.500
|
30.855
|
4.833
|
53.160
|
46.840
|
18.959
|
11.896
|
46.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
100.889
|
274.406
|
231.034
|
86.524
|
82.497
|
68.980
|
94.582
|
217.564
|
29.983
|
23.055
|
26.024
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.478
|
-1.802
|
-1.308
|
— | — |
0.466
|
1.551
|
-1.058
|
— | — | — | — | — |
No JSON data available for plots.