SCN Proteipedia

Hg_chrom5_TN10mRNA_10107

Organism: Heterodera glycines Gene Locus: chr5:5791756-5794641 Feature type: polypeptide

Protein Sequence

Length: 590

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	1.301	0.924	0.701	0.96	1.347	0.787	1.441	1.318	0.825	0.899	0.997	0.989	1.239	1.418	1.356	1.25	0.668	0.391	0.499	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9509	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.990

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KRGGRGNSGEKK,RKRSKTTETKKRRGS,KRYDSNNKPCWTREKRTRR	—	—	—	—	—	—	0.000	—	—	0.274	0.137	0.026	0.606	0.160	0.063	0.114	0.045	0.643	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009695	1.000	1.000	Hsc_gene_6871.t1	Hsc_gene_6871.t1	—	B1WAP7.1 Segment polarity protein dishevelled homolog DVL-3 [Xenopus tropicalis]	KAI1727478.1 DIX domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0016055	GO:0008150_0.945\|GO:0005575_0.935\|GO:0110165_0.932\|GO:0009987_0.900\|GO:0005622_0.848\|GO:0016020_0.788\|GO:0003674_0.775\|GO:0065007_0.768\|GO:0050789_0.751\|GO:0005488_0.744\|GO:0050794_0.738\|GO:0043226_0.737\|GO:0050896_0.683\|GO:0043229_0.676\|GO:0005515_0.672\|GO:0071840_0.662\|GO:0016043_0.652\|GO:0048518_0.634\|GO:0051716_0.625\|GO:0048522_0.620\|GO:0051179_0.615\|GO:0023052_0.614\|GO:0005737_0.601\|GO:0007154_0.592\|GO:0032501_0.592\|GO:0032502_0.587\|GO:0048856_0.587\|GO:0007165_0.577\|GO:0043227_0.575\|GO:0071944_0.567\|GO:0007275_0.561\|GO:0008152_0.553\|GO:0043170_0.553\|GO:0007166_0.551\|GO:0005886_0.542\|GO:0048731_0.541\|GO:0051641_0.524\|GO:0007399_0.510\|GO:0016055_0.509\|GO:0044238_0.507	IPR001158+40-122_40-124_42-111+\|IPR001478+300-371_301-371_302-372_310-383+\|IPR015506+41-501+\|IPR029071+43-107+\|IPR036034+280-392_294-401+\|IPR038207+40-122+	SM00021+40-124+\|SM00228+310-383+	PF00595+302-372+PDZ_domain\|PF00778+42-111+DIX_domain	—	PTHR10878+41-501+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30;198-266;422-590	2.000	31-197;267-421	8wwr_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.925	65304.280	9.083	20.500	26.610	8.644	54.576	45.424	15.763	10.847	53.729

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	1079.059	1097.755	996.587	883.520	763.204	763.573	2431.856	944.287	844.148	1132.479	1008.909

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.370	-0.450	—	-0.242	—	1.683	—	1.508	—	—	—	—	—

No JSON data available for plots.

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