Hg_chrom5_TN10mRNA_10110
Organism: Heterodera glycines Gene Locus: chr5:5805051-5806296 Feature type: polypeptideProtein Sequence
Length: 299
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.167 | 1.322 | 0.73 | 1.038 | 0.725 | 1.286 | 0.677 | 1.003 | 1.263 | 1.401 | 1.318 | 2.361 | 1.301 | 0.707 | 1.024 | 0.526 | 0.768 | 1.115 | 0.772 | 0.393 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9512
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RDEKRAR,KKDPSQWGPMFDGARRWKA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.347
|
0.530
|
0.086
|
0.581
|
0.325
|
0.291
|
0.628
|
0.005
|
0.174
|
0.281
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009698
|
1.000
|
1.000
|
Hsc_gene_6868.t1
|
Hsc_gene_6868.t1
|
— |
Q9QYF1.2 Retinol dehydrogenase 11 [Mus musculus]
|
KAH7721890.1 Retinol dehydrogenase 12 [Aphelenchus avenae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.823|GO:0110165_0.816|GO:0008150_0.792|GO:0003674_0.676|GO:0016020_0.639|GO:0009987_0.586|GO:0005622_0.585|GO:0043226_0.538|GO:0005737_0.525
|
IPR002347+6-23_6-212_83-94_191-208+|IPR036291+1-244+
|
— |
PF00106+6-212+short_chain_dehydrogenase
|
— |
PTHR24320+6-279+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-299
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
33368.300
|
10.086
|
19.000
|
24.080
|
9.030
|
43.144
|
56.856
|
15.719
|
8.361
|
47.826
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
8.572
|
7.983
|
11.057
|
58.815
|
10.857
|
1.266
|
5.073
|
4.956
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.747
|
2.517
|
-2.466
|
-3.092
|
— | — | — | — |
6.735
|
— | — | — |
No JSON data available for plots.