Hg_chrom5_TN10mRNA_10112
Organism: Heterodera glycines Gene Locus: chr5:5812008-5816381 Feature type: polypeptideProtein Sequence
Length: 794
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.01 | 1.172 | 1.191 | 0.391 | 1.008 | 1.033 | 0.6 | 1.448 | 1.147 | 0.953 | 0.687 | 1.556 | 1.749 | 1.09 | 1.439 | 1.08 | 0.496 | 0.916 | 1.356 | 1.111 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9514
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— | — | — |
14-42
|
0.999
|
1-27
|
0.942
|
0.983
|
0.000
|
0.000
|
0.321
|
0.209
|
0.189
|
0.403
|
0.375
|
0.316
|
0.218
|
0.095
|
0.367
|
0.482
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009699
|
1.000
|
1.000
|
Hsc_gene_6866.t1
|
Hsc_gene_6866.t1
|
— |
Q18673.3 Neprilysin-1 [Caenorhabditis elegans]
|
KAI1710050.1 peptidase family m13 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0008150_0.818|GO:0005575_0.757|GO:0110165_0.755|GO:0003674_0.734|GO:0016020_0.623|GO:0009987_0.605|GO:0008152_0.582|GO:0003824_0.565|GO:0005622_0.544
|
IPR000718+56-794_103-794_124-792+|IPR008753+126-526+|IPR018497+578-590_586-793_596-608_617-633_689-700+|IPR024079+111-794+|IPR042089+152-573+
|
— |
PF01431+586-793+Peptidase_family_M13|PF05649+126-526+Peptidase_family_M13
|
— |
PTHR11733+56-794+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-794
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.668
|
90866.710
|
6.760
|
3.500
|
27.078
|
14.736
|
46.725
|
53.275
|
14.484
|
12.594
|
48.741
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
4828.219
|
855.774
|
6614.282
|
2019.572
|
3879.378
|
10347.199
|
3154.106
|
13122.867
|
460.572
|
5780.587
|
3500.581
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.724
|
1.101
|
-1.605
|
0.910
|
1.432
|
-1.705
|
— |
-1.916
|
-3.759
|
— | — | — | — |