Hg_chrom5_TN10mRNA_10113
Organism: Heterodera glycines Gene Locus: chr5:5819487-5823933 Feature type: polypeptideProtein Sequence
Length: 745
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.108 | 1.28 | 0.757 | 0.278 | 1.275 | 0.929 | 0.719 | 1.342 | 1.014 | 1.27 | 0.752 | 1.026 | 1.454 | 1.11 | 1.287 | 0.825 | 0.726 | 1.139 | 1.239 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9515
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.798
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.023
|
— | — |
0.134
|
0.064
|
0.013
|
0.320
|
0.390
|
0.640
|
0.712
|
0.004
|
0.304
|
0.522
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009700
|
1.000
|
1.000
|
Hsc_gene_6865.t1
|
Hsc_gene_6865.t1
|
— |
P91406.2 Glutamate carboxypeptidase 2 homolog [Caenorhabditis elegans]
|
KAH7698662.1 Protein R57.1 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.779|GO:0005575_0.752|GO:0110165_0.752|GO:0016020_0.669|GO:0003674_0.546|GO:0071944_0.530|GO:0009987_0.517|GO:0005886_0.515
|
IPR003137+153-247+|IPR007365+619-714+|IPR007484+342-525+|IPR036757+583-744_595-722+|IPR039373+13-711+|IPR046450+96-344+
|
— |
PF02225+153-247+PA_domain|PF04253+619-714+Transferrin_receptor-like_dimerisation_domain|PF04389+342-525+Peptidase_family_M28
|
G3DSA:3.40.630.10:FF:000101+327-581+N-acetylated_alpha-linked_acidic_dipeptidase_like_1|G3DSA:3.50.30.30:FF:000033+104-333+Glutamate_carboxypeptidase_2_homolog
|
PTHR10404+13-711+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-745
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
83662.290
|
7.049
|
6.000
|
25.772
|
12.215
|
45.101
|
54.899
|
13.960
|
11.812
|
49.530
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
steelblue
|
1131.231
|
1824.681
|
2709.284
|
753.577
|
1054.742
|
1445.606
|
2069.991
|
635.322
|
592.470
|
569.833
|
579.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.340
|
-1.413
|
-1.736
|
0.453
|
0.470
|
0.528
|
-1.297
|
1.848
|
— | — | — | — | — |
No JSON data available for plots.