SCN Proteipedia

Hg_chrom5_TN10mRNA_10114

Organism: Heterodera glycines Gene Locus: chr5:5829080-5831826 Feature type: polypeptide

Protein Sequence

Length: 557

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.856	1.211	0.588	0.619	0.718	0.875	0.727	0.808	1.476	1.456	0.544	1.901	1.696	0.967	0.879	1.282	1.03	0.843	0.967	1.531	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9516	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-Not_Clustered	0.836

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RKQKSNTNNDKMTNKKSKL	—	—	—	—	—	—	0.000	—	—	0.092	0.068	0.016	0.106	0.332	0.546	0.296	0.042	0.724	0.076

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009701	1.000	1.000	Hsc_gene_6864.t1	Hsc_gene_6864.t1	—	Q0VA82.1 Major facilitator superfamily domain-containing protein 8 [Danio rerio]	KAI1702611.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0022857\|GO:0055085	GO:0008150_0.959\|GO:0005575_0.919\|GO:0110165_0.915\|GO:0009987_0.912\|GO:0003674_0.876\|GO:0016020_0.875\|GO:0051179_0.832\|GO:0006810_0.827\|GO:0051234_0.827\|GO:0005622_0.770\|GO:0055085_0.760\|GO:0043226_0.754\|GO:0005737_0.735\|GO:0043229_0.733\|GO:0006811_0.731\|GO:0034220_0.725\|GO:0043227_0.721\|GO:0005215_0.715\|GO:0022857_0.715\|GO:0098660_0.712\|GO:0043231_0.711\|GO:0005773_0.690\|GO:0015075_0.685\|GO:0015698_0.684\|GO:0006820_0.682\|GO:0015267_0.682\|GO:0022803_0.682\|GO:0098661_0.681\|GO:0006821_0.680\|GO:0098656_0.680\|GO:0005216_0.679\|GO:0015318_0.678\|GO:1902476_0.678\|GO:0008509_0.662\|GO:0015103_0.660\|GO:0005253_0.659\|GO:0015108_0.658\|GO:0005254_0.657\|GO:0071944_0.609\|GO:0005886_0.591\|GO:0000323_0.562\|GO:0005764_0.554	IPR011701+44-363_405-509+\|IPR020846+39-498+\|IPR036259+33-493_38-507+\|IPR051068+38-494+	—	PF07690+44-363_405-509+Major_Facilitator_Superfamily	—	PTHR23510+38-494+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5;508-557	1.000	6-507	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.806	62426.010	7.788	6.500	17.056	14.183	40.934	59.066	9.515	7.540	49.551

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	grey	567.440	135.973	566.644	498.428	863.186	1005.434	1216.659	518.261	73.954	625.363	389.045

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.826	1.736	—	0.761	—	0.285	-1.063	1.373	—	—	—	—	—

No JSON data available for plots.

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