Hg_chrom5_TN10mRNA_10116
Organism: Heterodera glycines Gene Locus: chr5:5833794-5838835 Feature type: polypeptideProtein Sequence
Length: 833
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 0.754 | 0.96 | 0.455 | 1.12 | 0.862 | 1.015 | 1.561 | 1.174 | 1.152 | 0.837 | 1.342 | 1.501 | 1.339 | 1.592 | 1.012 | 0.453 | 0.8 | 2.124 | 0.812 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9518
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
FKRR,KRRP,RKRR,RRHWIEIGDDLRKMFRK
|
— | — | — | — |
1-29
|
0.965
|
0.899
|
0.000
|
0.000
|
0.366
|
0.115
|
0.064
|
0.565
|
0.140
|
0.285
|
0.154
|
0.067
|
0.182
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009703
|
1.000
|
1.000
|
Hsc_gene_6862.t1
|
Hsc_gene_6862.t1
|
— |
A0A3G1DJI3.1 Probable hydrolase M10 [Phoma sp. MF5453]
|
KAI1725277.1 beta-lactamase domain-containing protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.689|GO:0005575_0.668|GO:0110165_0.666|GO:0003674_0.641|GO:0003824_0.515
|
IPR001466+474-807+|IPR012338+460-801_473-806+|IPR023650+522-537+|IPR049511+292-319_325-371+|IPR050491+166-820+
|
— |
PF00144+474-807+Beta-lactamase|PF17660+292-319_325-371+Polyglycine_hydrolase-like,_structural_repeat
|
— |
PTHR46825+166-820+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
48-168
|
2.000
|
1-47;169-833
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
94956.380
|
8.933
|
24.000
|
28.451
|
14.046
|
44.898
|
55.102
|
16.447
|
12.005
|
46.459
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
1077.220
|
253.782
|
546.638
|
408.529
|
167.636
|
139.224
|
296.897
|
355.319
|
88.098
|
3833.754
|
2228.473
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
0.550
|
-0.311
|
-1.316
|
— |
1.103
|
1.248
|
— |
-5.575
|
— |
-4.159
|
— | — |