Hg_chrom5_TN10mRNA_10117
Organism: Heterodera glycines Gene Locus: chr5:5839372-5840200 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.651 | 0.976 | 0.763 | 0.0 | 0.816 | 0.179 | 0.749 | 2.797 | 1.554 | 0.662 | 1.695 | 1.645 | 0.389 | 0.672 | 2.712 | 0.999 | 1.146 | 1.271 | 0.0 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9519
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKSRKRHFNAPSHIRRRIM
|
6-31
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.563
|
0.316
|
0.101
|
0.503
|
0.204
|
0.109
|
0.145
|
0.009
|
0.027
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009704
|
1.000
|
1.000
|
Hsc_gene_6861.t1
|
Hsc_gene_6861.t1
|
— |
Q19869.1 Large ribosomal subunit protein uL24 [Caenorhabditis elegans]
|
KAH7727067.1 60S ribosomal protein L26 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.896|GO:0110165_0.892|GO:0043226_0.803|GO:0005622_0.772|GO:0043229_0.732|GO:0005737_0.660|GO:0043228_0.655|GO:0043232_0.647|GO:0005829_0.626|GO:0005840_0.626|GO:0022626_0.626|GO:0016020_0.606|GO:0003674_0.590|GO:0032991_0.590|GO:1990904_0.590|GO:0044391_0.572|GO:0008150_0.556|GO:0043227_0.507|GO:0015934_0.503
|
IPR005756+1-142_8-121_8-122+|IPR005824+48-75_52-82+|IPR008991+8-125+|IPR014722+1-143+|IPR041988+52-105+
|
SM00739+48-75+
|
PF00467+52-82+KOW_motif|PF16906+8-121+Ribosomal_proteins_L26_eukaryotic,_L24P_archaeal
|
G3DSA:2.30.30.30:FF:000009+1-143+60S_ribosomal_protein_L26
|
PTHR11143+1-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-143
|
0.000
|
— |
9cai_CY
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
16412.050
|
11.838
|
26.000
|
39.161
|
9.091
|
58.042
|
41.958
|
30.070
|
9.091
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.