Hg_chrom5_TN10mRNA_10118
Organism: Heterodera glycines Gene Locus: chr5:5840566-5843211 Feature type: polypeptideProtein Sequence
Length: 293
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 1.111 | 0.248 | 1.177 | 0.796 | 0.963 | 0.65 | 1.877 | 1.441 | 1.568 | 0.672 | 1.405 | 2.56 | 0.591 | 1.393 | 1.121 | 1.175 | 0.517 | 0.788 | 0.903 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9520
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
47-79
|
0.976
|
— | — | — | — |
0.000
|
— | — |
0.082
|
0.897
|
0.043
|
0.119
|
0.122
|
0.243
|
0.268
|
0.064
|
0.063
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009705
|
1.000
|
1.000
|
Hsc_gene_6860.t1
|
Hsc_gene_6860.t1
|
— |
Q52KK3.1 Mitochondrial nicotinamide adenine dinucleotide transporter SLC25A51 [Rattus norvegicus]
|
KHN85079.1 Solute carrier family 25 member 51 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.840|GO:0110165_0.837|GO:0016020_0.790|GO:0005622_0.764|GO:0043226_0.734|GO:0008150_0.723|GO:0005737_0.722|GO:0043229_0.719|GO:0043227_0.705|GO:0043231_0.700|GO:0009987_0.670|GO:0003674_0.570
|
IPR018108+7-87_7-88_96-181_99-184_197-283+|IPR023395+9-281_10-292+|IPR052465+7-285+
|
— |
PF00153+7-88_99-184_197-283+Mitochondrial_carrier_protein
|
— |
PTHR46131+7-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
33723.250
|
9.831
|
20.500
|
21.160
|
17.065
|
44.710
|
55.290
|
15.017
|
6.143
|
42.662
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
saddlebrown
|
636.887
|
516.577
|
648.702
|
437.645
|
455.099
|
478.785
|
475.308
|
998.706
|
406.045
|
977.788
|
732.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.377
|
-0.459
|
— | — | — |
0.958
|
-0.932
|
— | — | — | — | — |
No JSON data available for plots.