Hg_chrom5_TN10mRNA_10121
Organism: Heterodera glycines Gene Locus: chr5:5847997-5849483 Feature type: polypeptideProtein Sequence
Length: 206
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.734 | 0.79 | 1.324 | 0.335 | 1.052 | 1.245 | 0.693 | 0.243 | 1.618 | 0.918 | 1.103 | 1.428 | 1.348 | 0.467 | 1.189 | 1.11 | 1.194 | 1.25 | 1.12 | 0.857 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9523
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.893
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.264
|
0.177
|
0.026
|
0.435
|
0.220
|
0.647
|
0.662
|
0.022
|
0.419
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009708
|
1.000
|
1.000
|
Hsc_gene_6857.t1
|
Hsc_gene_6857.t1
|
— |
Q22782.1 Ras-related protein rab-6.2 [Caenorhabditis elegans]
|
KAH7728834.1 CBN-RAB-6.2 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.956|GO:0110165_0.956|GO:0005622_0.870|GO:0005737_0.819|GO:0016020_0.811|GO:0071944_0.791|GO:0043226_0.785|GO:0005886_0.776|GO:0043229_0.763|GO:0043227_0.706|GO:0008150_0.679|GO:0005773_0.663|GO:0043231_0.663|GO:0009987_0.638|GO:0012505_0.597|GO:0051179_0.518|GO:0003674_0.514
|
IPR001806+7-206_13-171_14-174+|IPR005225+10-166+|IPR027417+1-176_10-177+|IPR050227+11-179+
|
SM00173+9-171+|SM00174+14-174+|SM00175+12-175+|SM00176+17-205+
|
PF00071+13-171+Ras_family
|
G3DSA:3.40.50.300:FF:000139+1-176+ras-related_protein_Rab-6A_isoform_X1
|
PTHR47977+11-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-206
|
3bbp_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
23279.520
|
6.005
|
-0.500
|
27.184
|
9.709
|
50.485
|
49.515
|
13.592
|
13.592
|
49.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
1688.641
|
696.432
|
1169.464
|
1208.190
|
1394.863
|
1680.074
|
3302.334
|
1591.445
|
1515.155
|
2110.390
|
1855.289
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
0.658
|
0.156
|
0.175
|
0.283
|
0.985
|
— |
1.195
|
— | — | — | — | — |
No JSON data available for plots.