Hg_chrom5_TN10mRNA_10123
Organism: Heterodera glycines Gene Locus: chr5:5851950-5854318 Feature type: polypeptideProtein Sequence
Length: 500
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.605 | 1.349 | 1.091 | 0.966 | 0.967 | 0.974 | 0.643 | 2.0 | 1.6 | 1.189 | 0.697 | 0.706 | 2.444 | 0.577 | 0.898 | 1.143 | 0.689 | 0.818 | 2.154 | 0.824 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9525
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.879
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRHENSIVFDVAGKRGWK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.199
|
0.018
|
0.683
|
0.215
|
0.254
|
0.329
|
0.028
|
0.088
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009710
|
1.000
|
1.000
|
Hsc_gene_6855.t1
|
Hsc_gene_6855.t1
|
— |
Q8NFI3.1 Cytosolic endo-beta-N-acetylglucosaminidase [Homo sapiens]
|
KAI1730856.1 glycosyl hydrolase family 85 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0033925
|
GO:0003674_0.867|GO:0005575_0.863|GO:0110165_0.859|GO:0003824_0.799|GO:0008150_0.773|GO:0005622_0.766|GO:0005737_0.756|GO:0016787_0.707|GO:0004553_0.659|GO:0016798_0.659|GO:0008152_0.634|GO:0044238_0.603|GO:0043170_0.561|GO:0019538_0.550|GO:0016020_0.511
|
IPR005201+76-333+|IPR032979+35-349+
|
— |
PF03644+76-333+Glycosyl_hydrolase_family_85
|
— |
PTHR13246+35-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
57864.650
|
6.163
|
-4.000
|
24.800
|
18.400
|
46.600
|
53.400
|
13.000
|
11.800
|
45.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkturquoise
|
908.029
|
642.441
|
704.793
|
704.822
|
749.966
|
715.156
|
1047.971
|
626.483
|
484.433
|
1662.439
|
1157.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.561
|
— |
0.885
|
— | — | — | — | — |
No JSON data available for plots.