Hg_chrom5_TN10mRNA_10125
Organism: Heterodera glycines Gene Locus: chr5:5857249-5859714 Feature type: polypeptideProtein Sequence
Length: 568
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.126 | 1.924 | 0.704 | 1.093 | 1.086 | 1.309 | 0.943 | 1.056 | 0.665 | 0.666 | 1.2 | 1.346 | 0.734 | 1.117 | 0.97 | 1.408 | 1.097 | 0.534 | 0.542 | 0.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9527
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.960
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGLKRKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.946
|
0.082
|
0.020
|
0.244
|
0.038
|
0.007
|
0.015
|
0.020
|
0.064
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009712
|
1.000
|
1.000
|
Hsc_gene_6853.t1
|
Hsc_gene_6853.t1
|
— |
A8XJ98.1 FLYWCH-type zinc finger-containing protein peb-1 [Caenorhabditis briggsae]
|
KAH7714402.1 CBN-PEB-1 protein [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.924|GO:0110165_0.924|GO:0005622_0.844|GO:0016020_0.819|GO:0043226_0.797|GO:0043229_0.779|GO:0043227_0.733|GO:0043231_0.718|GO:0005634_0.705|GO:0008150_0.610|GO:0065007_0.557|GO:0009987_0.555|GO:0050789_0.549|GO:0003674_0.534|GO:0005488_0.534|GO:0050794_0.534
|
IPR007588+15-81+
|
— |
PF04500+15-81+FLYWCH_zinc_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;162-259;297-568
|
2.000
|
3-161;260-296
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.968
|
61167.950
|
8.741
|
19.000
|
25.176
|
6.690
|
55.106
|
44.894
|
14.789
|
10.387
|
58.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
red
|
814.577
|
357.336
|
375.580
|
290.942
|
585.549
|
1182.232
|
676.915
|
660.275
|
101.472
|
1939.359
|
1151.693
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.157
|
-0.434
|
-0.260
|
0.977
|
1.030
|
-0.795
|
-0.951
|
— | — | — | — | — | — |
No JSON data available for plots.