Hg_chrom5_TN10mRNA_10126
Organism: Heterodera glycines Gene Locus: chr5:5865603-5869546 Feature type: polypeptideProtein Sequence
Length: 631
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.143 | 0.737 | 0.778 | 0.328 | 0.634 | 1.016 | 1.094 | 0.872 | 1.338 | 1.478 | 0.504 | 2.61 | 1.629 | 1.28 | 0.97 | 0.928 | 0.727 | 0.888 | 1.097 | 0.839 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9528
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKAKGNGRVAGGMGRGRTR,KGAKKHRKAKGNGRVAGGMGR
|
8-30
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.093
|
0.228
|
0.014
|
0.165
|
0.324
|
0.361
|
0.354
|
0.118
|
0.718
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009713
|
1.000
|
1.000
|
Hsc_gene_25424.t1
|
Hsc_gene_25424.t1
|
— |
Q8BRU6.1 Synaptic vesicular amine transporter [Mus musculus]
|
KAI1706610.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.929|GO:0110165_0.929|GO:0008150_0.902|GO:0009987_0.845|GO:0051179_0.807|GO:0016020_0.798|GO:0051234_0.798|GO:0006810_0.796|GO:0071944_0.770|GO:0003674_0.764|GO:0005886_0.758|GO:0055085_0.702|GO:0005215_0.651|GO:0022857_0.651|GO:0030054_0.639|GO:0005622_0.634|GO:0051641_0.622|GO:0071705_0.622|GO:0051649_0.607|GO:0045202_0.600|GO:0006836_0.597|GO:0043226_0.583|GO:0005737_0.573|GO:0043229_0.562|GO:0006811_0.556|GO:0034220_0.556|GO:0043227_0.556|GO:0043231_0.545|GO:0098793_0.539|GO:0098660_0.537|GO:0006812_0.521|GO:0015075_0.519|GO:0015844_0.517|GO:0098655_0.517|GO:0098662_0.512|GO:0015318_0.510|GO:0008324_0.503|GO:0022804_0.501
|
IPR011701+216-508+|IPR020846+152-561+|IPR036259+16-564_206-555+|IPR050930+9-560+
|
— |
PF07690+216-508+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000145+197-557+Chromaffin_granule_amine_transporter
|
PTHR23506+9-560+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
61-193
|
2.000
|
1-60;194-631
|
8xiu_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
68918.110
|
7.479
|
5.500
|
17.908
|
11.886
|
35.975
|
64.025
|
9.826
|
8.082
|
50.872
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
764.102
|
425.853
|
1742.388
|
723.730
|
275.445
|
416.001
|
339.184
|
1075.320
|
119.549
|
1379.066
|
839.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.804
|
0.628
|
-1.159
|
-1.424
|
0.609
|
-0.285
|
1.269
|
-1.525
|
-3.651
|
— |
-1.988
|
— | — |
No JSON data available for plots.