Hg_chrom5_TN10mRNA_10127
Organism: Heterodera glycines Gene Locus: chr5:5871968-5880679 Feature type: polypeptideProtein Sequence
Length: 1,756
(Signal peptide: 1-25)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.987 | 1.112 | 0.756 | 2.828 | 0.788 | 1.416 | 1.105 | 0.797 | 0.595 | 0.685 | 0.492 | 1.005 | 1.281 | 1.588 | 0.883 | 1.546 | 0.803 | 0.682 | 0.526 | 0.72 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9529
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.689
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-25
|
0.996
|
1.000
|
0.000
|
0.000
|
0.126
|
0.098
|
0.033
|
0.289
|
0.051
|
0.079
|
0.090
|
0.025
|
0.350
|
0.858
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009714
|
1.000
|
1.000
|
Hsc_gene_25423.t1
|
Hsc_gene_25422.t1;Hsc_gene_25423.t1
|
— |
O76840.1 Papilin [Caenorhabditis elegans]
|
KAI1695339.1 lustrin, cysteine-rich repeated domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004867|GO:0005576|GO:0008061
|
GO:0008150_0.791|GO:0005575_0.731|GO:0110165_0.729|GO:0003674_0.621|GO:0009987_0.588|GO:0005488_0.505
|
IPR002223+356-414_357-413_358-413_470-527_471-527_472-526_574-630_576-629+|IPR002557+30-87+|IPR006149+1514-1569+|IPR006150+120-163_173-219_222-269_277-310_313-352_416-466_532-570_635-679_682-729_783-821_824-870_921-968_971-1015_1021-1067_1074-1119_1128-1183_1355-1401+|IPR020901+504-522_607-625+|IPR028150+122-163_223-269_314-352_535-570_637-679_683-729_832-869_926-968_973-1014_1022-1067_1076-1119_1356-1401+|IPR036508+33-81+|IPR036880+348-416_354-414_462-528_467-533_566-630_570-634+|IPR053014+172-303+
|
SM00131+356-414_470-527_574-630+|SM00289+120-163_173-219_222-269_277-310_313-352_416-466_532-570_635-679_682-729_783-821_824-870_921-968_971-1015_1021-1067_1074-1119_1128-1183_1355-1401+
|
PF00014+357-413_471-527_576-629+Kunitz/Bovine_pancreatic_trypsin_inhibitor_domain|PF01683+1514-1569+EB_module|PF14625+122-163_223-269_314-352_535-570_637-679_683-729_832-869_926-968_973-1014_1022-1067_1076-1119_1356-1401+Lustrin,_cysteine-rich_repeated_domain
|
— |
PTHR46339+172-303+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1687-1756
|
1.000
|
1-1686
|
1zr0_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
186558.960
|
5.963
|
-9.000
|
18.052
|
9.339
|
44.077
|
55.923
|
9.169
|
8.884
|
63.383
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
898.680
|
788.892
|
453.134
|
297.624
|
325.508
|
978.318
|
858.384
|
408.535
|
74.536
|
2334.425
|
1365.901
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.028
|
-1.544
|
-0.498
|
— |
1.602
|
-0.178
|
-1.367
|
1.215
|
-5.098
|
— | — | — | — |