Hg_chrom5_TN10mRNA_10131
Organism: Heterodera glycines Gene Locus: chr5:5887259-5890487 Feature type: polypeptideProtein Sequence
Length: 241
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.965 | 1.64 | 1.584 | 0.143 | 1.314 | 1.17 | 0.889 | 0.207 | 1.014 | 0.841 | 1.509 | 1.709 | 1.959 | 0.559 | 1.101 | 0.83 | 0.68 | 0.44 | 0.958 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9533
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— |
KEKGKRRKAN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.226
|
0.288
|
0.030
|
0.467
|
0.214
|
0.392
|
0.253
|
0.026
|
0.802
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009718
|
1.000
|
1.000
|
Hsc_gene_25417.t1
|
Hsc_gene_25417.t1
|
— |
Q91614.2 Neuronal calcium sensor 1 [Xenopus laevis]
|
KAH7728918.1 Protein NCS-3 [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.747|GO:0005575_0.719|GO:0110165_0.717|GO:0003674_0.604|GO:0009987_0.603|GO:0005622_0.570|GO:0005488_0.524|GO:0016020_0.509|GO:0065007_0.504
|
IPR002048+100-135_104-132_107-165_108-130_136-171_139-211_140-168_140-212_184-219_188-216+|IPR011992+46-227+|IPR018247+113-125_149-161+|IPR028846+44-224+
|
SM00054+104-132_140-168_188-216+
|
PF00036+108-130+EF_hand|PF13499+139-211+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000009+41-228+Visinin-like_protein_1
|
PTHR23055+44-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51;216-241
|
1.000
|
52-215
|
9gu6_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.650
|
27373.580
|
5.274
|
-2.500
|
32.365
|
10.788
|
53.942
|
46.058
|
15.768
|
16.598
|
47.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
722.791
|
274.715
|
1461.519
|
642.727
|
812.627
|
1171.144
|
598.923
|
1460.152
|
848.419
|
117.719
|
430.876
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.183
|
1.089
|
-1.077
|
0.307
|
0.542
|
-0.958
|
— |
-1.146
|
— | — | — | — | — |
No JSON data available for plots.