Hg_chrom5_TN10mRNA_10135
Organism: Heterodera glycines Gene Locus: chr5:5904769-5905201 Feature type: polypeptideProtein Sequence
Length: 82
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.134 | 1.418 | 0.665 | 0.841 | 0.407 | 1.563 | 1.597 | 0.0 | 0.813 | 1.483 | 1.293 | 2.869 | 0.678 | 0.235 | 0.996 | 0.697 | 1.2 | 0.739 | 1.876 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9537
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.089
|
0.913
|
0.131
|
0.132
|
0.030
|
0.290
|
0.050
|
0.126
|
0.120
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9N4K0.2 MICOS complex subunit Mic10 [Caenorhabditis elegans]
|
XP_024508550.1 Mitochondrial inner membrane organizing system protein 1 [Strongyloides ratti];CEF69350.1 Mitochondrial inner membrane organizing system protein 1 [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0061617
|
GO:0005575_0.934|GO:0110165_0.926|GO:0016020_0.800|GO:0005622_0.774|GO:0043226_0.758|GO:0005737_0.737|GO:0043229_0.736|GO:0043227_0.698|GO:0043231_0.695|GO:0008150_0.656|GO:0009987_0.589|GO:0005739_0.563
|
IPR007512+1-73_2-63+
|
— |
PF04418+2-63+Domain_of_unknown_function_(DUF543)
|
— |
PTHR21304+1-73+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
65-82
|
1.000
|
1-64
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
8755.190
|
10.664
|
6.000
|
19.512
|
4.878
|
43.902
|
56.098
|
13.415
|
6.098
|
53.659
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1624.888
|
1177.868
|
1274.559
|
1143.663
|
1384.578
|
1193.119
|
963.573
|
1115.722
|
1180.244
|
3128.795
|
2293.702
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.116
|
-0.180
|
— |
0.243
|
— |
-0.298
|
— | — |
-1.507
|
— | — | — | — |
No JSON data available for plots.