Hg_chrom5_TN10mRNA_10137
Organism: Heterodera glycines Gene Locus: chr5:5910553-5912098 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.654 | 0.509 | 0.852 | 0.647 | 1.927 | 1.282 | 0.595 | 0.781 | 1.25 | 1.351 | 1.089 | 2.941 | 1.649 | 0.721 | 1.148 | 0.759 | 0.666 | 0.852 | 1.202 | 0.827 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9539
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
LRKQFERRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.282
|
0.571
|
0.502
|
0.275
|
0.109
|
0.051
|
0.123
|
0.205
|
0.126
|
0.195
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009723
|
1.000
|
1.000
|
Hsc_gene_25410.t1
|
Hsc_gene_25410.t1
|
— | — |
KHN82499.1 mTERF domain-containing protein 2 [Toxocara canis]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.912|GO:0005622_0.868|GO:0003674_0.864|GO:0016020_0.841|GO:0005737_0.820|GO:0043226_0.810|GO:0043229_0.799|GO:0005488_0.787|GO:0043227_0.765|GO:0043231_0.748|GO:0097159_0.685|GO:0032991_0.679|GO:0003676_0.673|GO:0003723_0.673|GO:0005829_0.654|GO:0019843_0.650|GO:0043228_0.641|GO:0043232_0.641|GO:0031974_0.606|GO:0043233_0.603|GO:0070013_0.603|GO:0005739_0.570|GO:1990904_0.556|GO:0005759_0.549|GO:0005840_0.549|GO:0044391_0.546|GO:0015934_0.545|GO:0000313_0.540|GO:0000315_0.540|GO:0005761_0.540|GO:0005762_0.540|GO:0098798_0.540
|
IPR038538+50-278+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
319-320
|
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
37324.140
|
4.927
|
-8.500
|
30.625
|
11.875
|
47.188
|
52.812
|
14.375
|
16.250
|
38.125
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
1065.918
|
904.607
|
811.611
|
739.149
|
848.363
|
654.480
|
701.119
|
677.868
|
674.229
|
2156.270
|
1521.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.386
|
-0.428
|
— |
0.167
|
-0.360
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.