Hg_chrom5_TN10mRNA_10138
Organism: Heterodera glycines Gene Locus: chr5:5912341-5913754 Feature type: polypeptideProtein Sequence
Length: 213
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.819 | 0.764 | 0.598 | 0.486 | 0.469 | 0.722 | 0.391 | 0.939 | 2.4 | 1.903 | 0.498 | 1.105 | 2.739 | 0.271 | 0.958 | 0.939 | 0.847 | 1.209 | 1.445 | 1.933 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9540
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — |
25-45
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.101
|
0.183
|
0.013
|
0.107
|
0.541
|
0.392
|
0.625
|
0.065
|
0.348
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009724
|
1.000
|
1.000
|
Hsc_gene_25409.t1
|
Hsc_gene_25409.t1
|
— |
Q611C8.1 ER lumen protein-retaining receptor [Caenorhabditis briggsae]
|
KAI6201478.1 ER lumen protein-retaining receptor [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006621|GO:0016020|GO:0046923
|
GO:0005575_0.918|GO:0110165_0.918|GO:0016020_0.883|GO:0071944_0.813|GO:0005886_0.806|GO:0005622_0.762|GO:0005737_0.762|GO:0005773_0.726|GO:0043226_0.726|GO:0043227_0.726|GO:0043229_0.726|GO:0043231_0.726|GO:0012505_0.676|GO:0008150_0.609|GO:0009987_0.562|GO:0005783_0.560
|
IPR000133+1-204_4-23_28-169_31-51_52-68_120-140_126-135_142-156_156-174_184-199+
|
— |
PF00810+28-169+ER_lumen_protein_retaining_receptor
|
— |
PTHR10585+1-204+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-213
|
7oye_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.548
|
24898.560
|
8.897
|
6.000
|
15.962
|
20.188
|
33.803
|
66.197
|
9.859
|
6.103
|
39.437
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2554.941
|
1506.909
|
1582.291
|
2604.171
|
3456.548
|
3584.921
|
2197.683
|
1786.374
|
2545.778
|
2998.948
|
2804.733
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.160
|
0.652
|
0.828
|
0.376
|
— |
-0.701
|
-1.105
|
0.435
|
— | — | — | — | — |
No JSON data available for plots.