SCN Proteipedia

Hg_chrom5_TN10mRNA_10139

Organism: Heterodera glycines Gene Locus: chr5:5913886-5918900 Feature type: polypeptide

Protein Sequence

Length: 992

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.02	1.383	0.916	0.452	1.042	1.396	0.372	0.554	1.389	1.458	0.779	1.364	0.98	1.299	0.782	0.994	0.942	1.314	0.465	0.712	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9541	—	—	1.111	1.000	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	0.982

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|lysosome_vacuole\|golgi_apparatus	—	KKGEIFELKNELNSDKKEK	—	—	—	—	—	—	0.000	—	—	0.271	0.140	0.017	0.536	0.333	0.609	0.705	0.160	0.286	0.078

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009725	1.000	1.000	Hsc_gene_25408.t1	Hsc_gene_25408.t1	—	P62944.1 AP-2 complex subunit beta [Rattus norvegicus]	KAF7632781.1 AP complex subunit beta [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006886\|GO:0015031\|GO:0016192\|GO:0030117\|GO:0030131\|GO:0030276	GO:0005575_0.919\|GO:0110165_0.914\|GO:0005622_0.856\|GO:0016020_0.844\|GO:0008150_0.769\|GO:0005737_0.764\|GO:0009987_0.726\|GO:0043226_0.690\|GO:0071944_0.686\|GO:0005886_0.674\|GO:0043229_0.662\|GO:0043227_0.629\|GO:0043231_0.600\|GO:0003674_0.505\|GO:0016043_0.501\|GO:0071840_0.501	IPR000225+146-186_268-305+\|IPR002553+12-526+\|IPR008152+750-859_757-858+\|IPR009028+867-979+\|IPR011989+1-584+\|IPR012295+864-979+\|IPR013037+748-863+\|IPR013041+751-865+\|IPR015151+868-979_870-978+\|IPR016024+9-575+\|IPR016342+1-811+\|IPR026739+1-942+	SM00185+146-186_268-305+\|SM00809+750-859+\|SM01020+868-979+	PF01602+12-526+Adaptin_N_terminal_region\|PF02883+757-858+Adaptin_C-terminal_domain\|PF09066+870-978+Beta2-adaptin_appendage,_C-terminal_sub-domain	G3DSA:1.25.10.10:FF:000002+1-585+AP_complex_subunit_beta\|G3DSA:2.60.40.1150:FF:000001+748-863+AP_complex_subunit_beta	PTHR11134+1-942+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	639-715	2.000	1-638;716-992	8t1o_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.556	109832.270	4.930	-17.500	21.371	7.661	45.464	54.536	10.081	11.290	52.319

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	yellow	2712.610	3238.363	2719.993	2881.146	3148.191	3683.372	3866.160	3455.959	2228.671	1573.724	1854.415

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.480	-0.306	0.191	—	0.241	—	-0.198	0.304	—	—	—	—	—

No JSON data available for plots.

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