Hg_chrom5_TN10mRNA_10143
Organism: Heterodera glycines Gene Locus: chr5:5928480-5937362 Feature type: polypeptideProtein Sequence
Length: 1,484
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.034 | 0.772 | 0.651 | 0.842 | 1.33 | 0.802 | 1.584 | 0.988 | 1.521 | 0.531 | 1.308 | 1.535 | 0.739 | 1.293 | 1.328 | 0.884 | 0.817 | 0.933 | 0.614 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9545
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KKHK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.173
|
0.079
|
0.014
|
0.185
|
0.337
|
0.341
|
0.407
|
0.126
|
0.655
|
0.008
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003189
|
2.000
|
1.000
|
Hsc_gene_25403.t1
|
Hsc_gene_25403.t1;Hsc_gene_3873.t1
|
— |
P51830.1 Adenylate cyclase type 9 [Mus musculus]
|
KAI1728988.1 adenylate and guanylate cyclase catalytic domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009190|GO:0035556
|
GO:0005575_0.880|GO:0110165_0.879|GO:0008150_0.878|GO:0016020_0.812|GO:0009987_0.796|GO:0003674_0.780|GO:0065007_0.723|GO:0050896_0.711|GO:0071944_0.707|GO:0005886_0.697|GO:0050789_0.696|GO:0005622_0.681|GO:0050794_0.648|GO:0051716_0.604|GO:0003824_0.545|GO:0023052_0.539|GO:0007154_0.535|GO:0004016_0.521|GO:0009975_0.521|GO:0016829_0.521|GO:0016849_0.521|GO:0032501_0.502
|
IPR001054+301-537_378-536_382-549_384-511_1248-1449_1275-1468_1283-1423_1283-1467+|IPR029787+294-555_372-537_1240-1473_1277-1467+
|
SM00044+301-537_1248-1449+
|
PF00211+378-536_1275-1468+Adenylate_and_Guanylate_cyclase_catalytic_domain
|
G3DSA:3.30.70.1230:FF:000008+1270-1470+Adenylate_cyclase_type_9
|
PTHR45627+86-1471+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-77;593-870;1484-1484
|
2.000
|
78-592;871-1483
|
9u3v_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
164720.530
|
8.099
|
31.500
|
22.305
|
11.995
|
46.631
|
53.369
|
13.005
|
9.299
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
2221.407
|
7871.192
|
3592.191
|
2217.887
|
1310.222
|
1383.399
|
1312.858
|
2243.682
|
1720.345
|
954.112
|
1282.497
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.361
|
-1.965
|
-0.587
|
-0.791
|
— | — |
0.595
|
-0.633
|
— | — | — | — | — |
No JSON data available for plots.