Hg_chrom5_TN10mRNA_10144
Organism: Heterodera glycines Gene Locus: chr5:5937884-5940187 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.036 | 1.403 | 0.261 | 1.784 | 0.431 | 0.295 | 0.411 | 1.006 | 1.469 | 2.097 | 0.697 | 1.014 | 1.996 | 0.884 | 1.29 | 0.739 | 0.707 | 1.263 | 1.326 | 0.93 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9546
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
1-21
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.093
|
0.128
|
0.009
|
0.109
|
0.250
|
0.181
|
0.102
|
0.012
|
0.858
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009727
|
1.000
|
1.000
|
Hsc_gene_25402.t1
|
Hsc_gene_25402.t1
|
— |
Q09638.3 Neuropeptide receptor 15 [Caenorhabditis elegans]
|
KAF7633995.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
GO:0008150_0.929|GO:0009987_0.877|GO:0003674_0.794|GO:0050896_0.787|GO:0065007_0.786|GO:0050789_0.770|GO:0051716_0.753|GO:0023052_0.745|GO:0050794_0.745|GO:0007154_0.743|GO:0005575_0.732|GO:0110165_0.729|GO:0007165_0.723|GO:0007186_0.701|GO:0060089_0.697|GO:0038023_0.692|GO:0004888_0.676|GO:0004930_0.607|GO:0005886_0.606|GO:0016020_0.606|GO:0071944_0.606|GO:0005488_0.578
|
IPR000276+14-38_23-335_29-320_48-69_95-117_101-117_131-152_177-200_263-287_302-328+|IPR017452+29-320+
|
SM01381+23-335+
|
PF00001+29-320+7_transmembrane_receptor_(rhodopsin_family)
|
— |
PTHR24243+11-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.523
|
39460.420
|
9.864
|
27.500
|
16.954
|
14.080
|
33.621
|
66.379
|
12.931
|
4.023
|
47.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
347.885
|
623.113
|
522.248
|
281.991
|
170.253
|
181.752
|
123.197
|
361.722
|
227.772
|
502.066
|
384.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.485
|
-1.281
|
-0.780
|
-0.760
|
— |
-0.551
|
0.889
|
-1.412
|
— | — | — | — | — |
No JSON data available for plots.