Hg_chrom5_TN10mRNA_10145
Organism: Heterodera glycines Gene Locus: chr5:5940254-5941750 Feature type: polypeptideProtein Sequence
Length: 109
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.067 | 1.707 | 1.334 | 1.265 | 0.765 | 0.706 | 1.42 | 0.917 | 1.019 | 0.744 | 0.139 | 3.778 | 1.274 | 1.235 | 0.936 | 1.18 | 1.053 | 0.417 | 0.706 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9547
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.328
|
0.214
|
0.067
|
0.182
|
0.790
|
0.147
|
0.324
|
0.076
|
0.188
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009728
|
1.000
|
1.000
|
Hsc_gene_25401.t1
|
Hsc_gene_25401.t1
|
— |
Q498C7.1 Small integral membrane protein 14 [Rattus norvegicus]
|
KAI1721675.1 small integral membrane protein 14 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.635|GO:0110165_0.621|GO:0008150_0.597
|
IPR020309+3-101_3-105+
|
— |
PF11027+3-105+Protein_of_unknown_function_(DUF2615)
|
— |
PTHR31019+3-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
73-109
|
1.000
|
1-72
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
11483.790
|
4.210
|
-6.000
|
19.266
|
7.339
|
44.037
|
55.963
|
7.339
|
11.927
|
63.303
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
6446.641
|
1078.050
|
3813.342
|
3999.762
|
4109.397
|
7653.792
|
4458.099
|
13951.206
|
8879.653
|
6895.447
|
7745.821
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.594
|
1.754
|
0.177
|
— |
0.911
|
-0.769
|
0.764
|
-1.504
|
— | — | — | — | — |
No JSON data available for plots.