Hg_chrom5_TN10mRNA_10146
Organism: Heterodera glycines Gene Locus: chr5:5942390-5943170 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 0.596 | 0.746 | 0.177 | 2.393 | 2.367 | 0.488 | 0.769 | 0.456 | 1.04 | 1.787 | 1.508 | 0.712 | 0.592 | 2.198 | 0.44 | 0.841 | 0.389 | 0.394 | 0.754 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9548
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.544
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRTEYDENIAAKRRRDE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.760
|
0.072
|
0.004
|
0.547
|
0.027
|
0.070
|
0.138
|
0.008
|
0.038
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009729
|
1.000
|
1.000
|
Hsc_gene_25400.t1
|
Hsc_gene_25400.t1
|
— |
Q9QYI7.1 DnaJ homolog subfamily B member 8 [Mus musculus]
|
KAF7635285.1 J domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.902|GO:0005622_0.881|GO:0016020_0.806|GO:0043226_0.773|GO:0043229_0.754|GO:0005737_0.737|GO:0008150_0.714|GO:0043227_0.693|GO:0043231_0.649|GO:0009987_0.592|GO:0003674_0.558|GO:0005488_0.558|GO:0065007_0.548
|
IPR001623+10-69_11-66_11-74_11-77_13-31_31-46_49-69+|IPR036869+3-93_9-78+|IPR052094+1-165+
|
SM00271+10-69+
|
PF00226+11-74+DnaJ_domain
|
— |
PTHR44313+1-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-195
|
1.000
|
1-69
|
2dmx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.509
|
23065.020
|
10.063
|
9.500
|
42.564
|
7.179
|
62.564
|
37.436
|
24.103
|
18.462
|
34.359
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkgrey
|
631.432
|
327.404
|
561.967
|
478.942
|
538.671
|
463.944
|
553.072
|
518.966
|
1113.564
|
636.230
|
840.802
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
0.412
|
— |
0.138
|
-0.201
|
0.265
|
— | — | — | — | — | — | — |
No JSON data available for plots.