Hg_chrom5_TN10mRNA_10149
Organism: Heterodera glycines Gene Locus: chr5:5949519-5950806 Feature type: polypeptideProtein Sequence
Length: 327
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.925 | 0.569 | 1.112 | 0.316 | 1.274 | 1.333 | 0.801 | 1.376 | 1.223 | 1.24 | 0.695 | 0.72 | 0.849 | 1.294 | 1.747 | 0.612 | 0.953 | 0.834 | 1.647 | 1.079 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9551
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.097
|
0.969
|
0.074
|
0.169
|
0.018
|
0.032
|
0.053
|
0.040
|
0.034
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009732
|
1.000
|
1.000
|
Hsc_gene_25397.t1
|
Hsc_gene_25397.t1
|
— |
Q6DGM3.1 Large ribosomal subunit protein uL15m [Danio rerio]
|
KAI1713540.1 phosphoinositide 3-kinase family, accessory domain (PIK domain) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0006412|GO:0015934
|
GO:0005575_0.873|GO:0110165_0.868|GO:0005622_0.811|GO:0016020_0.775|GO:0005737_0.774|GO:0043226_0.742|GO:0043229_0.734|GO:0043227_0.715|GO:0043231_0.690|GO:0005739_0.563
|
IPR005749+17-268+|IPR021131+96-199+|IPR036227+94-208+
|
— |
PF00828+96-199+Ribosomal_proteins_50S-L15,_50S-L18e,_60S-L27A
|
— |
PTHR12934+17-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
327-327
|
1.000
|
1-326
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.582
|
37332.300
|
6.971
|
2.500
|
29.664
|
11.621
|
47.401
|
52.599
|
15.902
|
13.761
|
46.483
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1016.434
|
640.012
|
878.486
|
1153.503
|
1352.980
|
918.803
|
1601.908
|
685.230
|
356.326
|
1468.057
|
991.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.228
|
0.713
|
0.502
|
0.198
|
-0.544
|
0.813
|
-0.527
|
1.368
|
— | — | — | — | — |
No JSON data available for plots.