SCN Proteipedia

Hg_chrom5_TN10mRNA_10150

Organism: Heterodera glycines Gene Locus: chr5:5950809-5955117 Feature type: polypeptide

Protein Sequence

Length: 834

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.725	0.725	0.85	0.331	1.799	1.629	0.6	1.259	0.826	0.875	1.126	0.987	1.166	1.407	1.762	1.405	0.55	0.654	0.277	0.882	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9552	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RSRKRRR,RKRELEEANQKRRKGA,KKYVPQPKQQLTKKRIV,RKRRRRKSSKRRKRGRE,KRTLGTSPPQAPAEARKKK,RKKKKEKRREGEERRRRRK,KKKKEKRREGEERRRRRKK,KKKEKRREGEERRRRRKKR,KKEKRREGEERRRRRKKRR,KRREGEERRRRRKKRRTRS,EKRRQRRKQKGQEEGDSSLSHRRHQHRSRSRSPRR	—	—	—	—	—	—	0.000	—	—	0.918	0.070	0.004	0.140	0.056	0.022	0.119	0.050	0.076	0.035

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002220	1.000	3.000	Hsc_gene_25396.t1;Hsc_gene_25396.t2;Hsc_gene_25396.t3	Hsc_gene_25396.t1;Hsc_gene_25396.t2;Hsc_gene_25396.t3	—	Q10580.1 Protein SWAP [Caenorhabditis elegans]	KAH7727884.1 Surp module family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003723\|GO:0006396	GO:0008150_0.954\|GO:0009987_0.928\|GO:0008152_0.847\|GO:0043170_0.847\|GO:0006139_0.840\|GO:0044238_0.840\|GO:0090304_0.840\|GO:0009058_0.838\|GO:0009059_0.838\|GO:0010467_0.838\|GO:0044237_0.838\|GO:0044249_0.838\|GO:0034654_0.830\|GO:0141187_0.830\|GO:0016070_0.820\|GO:0032774_0.819\|GO:0006396_0.724\|GO:0016071_0.709\|GO:0006397_0.700\|GO:0000375_0.698\|GO:0000377_0.698\|GO:0008380_0.698\|GO:0000398_0.695\|GO:0065007_0.591\|GO:0050789_0.578\|GO:0050794_0.574	IPR000061+256-310_258-301_258-304_501-552_503-543_504-549+\|IPR019147+58-214+\|IPR035967+225-314_230-308_481-550_491-553+\|IPR040397+133-833+	SM00648+256-310_501-552+\|SM01141+58-214+	PF01805+258-304_504-549+Surp_module	—	PTHR13161+133-833+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	200-252;319-460;568-834	3.000	1-199;253-318;461-567	2e60_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.817	95582.850	8.414	15.500	34.053	10.072	56.715	43.285	18.585	15.468	44.844

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey60	2544.488	4995.890	4241.133	2571.201	2016.755	1796.084	2388.785	2654.946	2373.554	1602.673	1933.051

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.467	-1.095	-0.612	-0.382	—	0.422	0.459	—	—	—	—	—	—

No JSON data available for plots.

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