Hg_chrom5_TN10mRNA_10154
Organism: Heterodera glycines Gene Locus: chr5:5963967-5966747 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 1.221 | 0.955 | 0.83 | 1.167 | 0.954 | 0.417 | 1.422 | 1.605 | 1.124 | 0.729 | 1.802 | 1.58 | 0.631 | 1.34 | 1.25 | 0.969 | 0.663 | 2.188 | 0.772 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9556
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.350
|
0.257
|
0.004
|
0.701
|
0.176
|
0.376
|
0.409
|
0.042
|
0.175
|
0.081
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009735
|
1.000
|
1.000
|
Hsc_gene_25392.t1
|
Hsc_gene_25392.t1
|
— | — |
KAH7716962.1 Endonuclease/Exonuclease/phosphatase family protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791|GO:0046856
|
GO:0008150_0.948|GO:0005575_0.892|GO:0110165_0.890|GO:0009987_0.849|GO:0003674_0.815|GO:0016020_0.786|GO:0071944_0.714|GO:0005886_0.694|GO:0008152_0.656|GO:0003824_0.653|GO:0044238_0.633|GO:0044237_0.623|GO:0005622_0.615|GO:0016787_0.608|GO:0016788_0.581|GO:0016791_0.570|GO:0042578_0.570|GO:0005737_0.522|GO:0043226_0.522|GO:0006793_0.507|GO:0006796_0.507
|
IPR000300+20-320+|IPR036691+5-346_18-318+|IPR041611+378-451+|IPR046985+17-385+
|
SM00128+20-320+
|
PF17751+378-451+SKICH_domain|PF22669+27-311+Endonuclease/Exonuclease/phosphatase_family_2
|
— |
PTHR11200+17-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
53025.420
|
6.806
|
2.500
|
26.477
|
14.004
|
50.109
|
49.891
|
14.223
|
12.254
|
45.295
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
828.346
|
840.365
|
544.247
|
593.885
|
614.853
|
491.731
|
896.219
|
727.262
|
679.195
|
1348.908
|
1061.888
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.857
|
-0.638
|
0.235
|
— |
-0.308
|
0.875
|
0.460
|
0.443
|
— | — | — | — | — |
No JSON data available for plots.