Hg_chrom5_TN10mRNA_10156
Organism: Heterodera glycines Gene Locus: chr5:5967571-5968990 Feature type: polypeptideProtein Sequence
Length: 275
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.846 | 0.727 | 0.376 | 1.273 | 0.746 | 0.39 | 1.818 | 1.212 | 1.523 | 0.826 | 0.856 | 2.424 | 1.189 | 1.336 | 1.455 | 0.775 | 0.551 | 0.559 | 0.856 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9557
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.609
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
4-24
|
0.820
|
— | — |
0.000
|
— | — |
0.146
|
0.882
|
0.169
|
0.176
|
0.041
|
0.100
|
0.053
|
0.011
|
0.048
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004124
|
2.000
|
1.000
|
Hsc_gene_25391.t1
|
— | — |
Q0V9K2.2 sn-1-specific diacylglycerol lipase ABHD11 [Xenopus tropicalis]
|
KAF7635322.1 AB hydrolase-1 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.759|GO:0110165_0.755|GO:0005622_0.734|GO:0043226_0.689|GO:0016020_0.687|GO:0043229_0.679|GO:0005737_0.671|GO:0043227_0.639|GO:0043231_0.636|GO:0003674_0.525
|
IPR000073+50-260+|IPR029058+4-268_50-268+
|
— |
PF12697+50-260+Alpha/beta_hydrolase_family
|
— |
PTHR46118+50-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
31704.240
|
7.900
|
6.000
|
27.273
|
16.000
|
48.727
|
51.273
|
15.636
|
11.636
|
43.273
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
620.955
|
432.446
|
472.615
|
517.375
|
613.407
|
486.876
|
483.105
|
543.517
|
526.213
|
991.015
|
791.814
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.239
|
0.214
|
-0.319
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.