Hg_chrom5_TN10mRNA_10157
Organism: Heterodera glycines Gene Locus: chr5:5968999-5970342 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.716 | 0.932 | 0.354 | 1.88 | 0.526 | 0.977 | 1.795 | 1.026 | 0.97 | 1.166 | 2.413 | 1.14 | 0.296 | 1.151 | 1.026 | 0.925 | 1.321 | 1.578 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9558
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.478
|
0.184
|
0.039
|
0.620
|
0.135
|
0.692
|
0.255
|
0.017
|
0.341
|
0.328
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009736
|
1.000
|
1.000
|
Hsc_gene_25390.t1
|
Hsc_gene_25390.t1
|
— |
Q9WUD8.1 Fas apoptotic inhibitory molecule 1 [Mus musculus]
|
KAI6235145.1 Fas apoptotic inhibitory molecule 1 [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0043066
|
GO:0008150_0.921|GO:0009987_0.858|GO:0065007_0.780|GO:0050789_0.771|GO:0050896_0.764|GO:0050794_0.749|GO:0051716_0.738|GO:0023052_0.702|GO:0007154_0.701|GO:0007165_0.695|GO:0010646_0.689|GO:0048583_0.689|GO:0023051_0.687|GO:0009966_0.685|GO:0005575_0.599|GO:0110165_0.596|GO:0005622_0.557
|
IPR010695+2-179_10-180+|IPR038513+7-94_100-182+
|
— |
PF06905+10-180+Fas_apoptotic_inhibitory_molecule_(FAIM1)
|
G3DSA:2.40.128.180:FF:000001+7-94+Fas_apoptotic_inhibitory_molecule_1
|
PTHR13088+2-179+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
173-195
|
1.000
|
1-172
|
3mx7_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.602
|
22080.080
|
5.903
|
-2.500
|
33.333
|
11.282
|
51.282
|
48.718
|
16.923
|
16.410
|
46.154
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
412.630
|
345.012
|
454.863
|
372.809
|
226.094
|
215.966
|
293.224
|
340.957
|
773.121
|
382.069
|
549.662
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.168
|
— |
-0.177
|
-0.755
|
— |
0.452
|
0.552
|
— | — | — | — | — | — |
No JSON data available for plots.