Hg_chrom5_TN10mRNA_10160
Organism: Heterodera glycines Gene Locus: chr5:5975395-5979479 Feature type: polypeptideProtein Sequence
Length: 871
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.322 | 1.095 | 0.731 | 0.713 | 1.186 | 1.59 | 0.574 | 1.148 | 0.918 | 1.614 | 0.748 | 1.486 | 1.021 | 0.684 | 1.312 | 0.951 | 0.64 | 0.887 | 1.148 | 0.675 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9561
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
LGEV,KRLLRSASIGIRRCDR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.434
|
0.110
|
0.036
|
0.518
|
0.112
|
0.360
|
0.137
|
0.010
|
0.160
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004125
|
1.000
|
2.000
|
Hsc_gene_25387.t1;Hsc_gene_25387.t2
|
Hsc_gene_25387.t1;Hsc_gene_25387.t2
|
— |
Q5E9L7.1 Vacuolar protein sorting-associated protein 16 homolog [Bos taurus]
|
KAF7634005.1 Vps16_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005737|GO:0006886|GO:0007033
|
GO:0008150_0.888|GO:0005575_0.809|GO:0110165_0.808|GO:0005622_0.745|GO:0016020_0.732|GO:0043226_0.682|GO:0005737_0.663|GO:0043229_0.653|GO:0043227_0.626|GO:0043231_0.604|GO:0071944_0.597|GO:0005886_0.590|GO:0009987_0.583
|
IPR006925+542-850+|IPR006926+2-418+|IPR016534+2-860_2-868+
|
— |
PF04840+542-850+Vps16,_C-terminal_region|PF04841+2-418+Vps16,_N-terminal_region
|
— |
PTHR12811+2-860+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-871
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
97615.860
|
7.702
|
12.000
|
24.799
|
9.759
|
46.269
|
53.731
|
13.662
|
11.137
|
46.958
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
2140.002
|
3935.119
|
1894.160
|
2189.378
|
2377.628
|
2914.182
|
2950.581
|
2066.307
|
1499.075
|
1365.443
|
1422.714
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.284
|
-0.983
|
0.317
|
0.087
|
0.308
|
— |
-0.601
|
0.656
|
— | — | — | — | — |
No JSON data available for plots.