SCN Proteipedia

Hg_chrom5_TN10mRNA_10161

Organism: Heterodera glycines Gene Locus: chr5:5981376-5986922 Feature type: polypeptide

Protein Sequence

Length: 1,010

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.071	0.921	0.918	0.615	1.271	0.812	0.778	0.891	1.672	1.244	0.825	1.864	1.045	0.781	0.808	0.849	1.055	1.155	0.99	0.728	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9562	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_Clustered	0.952

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	RRMEAHGEDELLTAKKLK.	—	—	—	—	—	—	0.000	—	—	0.142	0.102	0.006	0.176	0.488	0.466	0.371	0.039	0.561	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009739	1.000	1.000	Hsc_gene_25386.t1	Hsc_gene_25386.t1	—	Q7PPA5.5 Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type [Anopheles gambiae]	KAI6234963.1 Calcium-transporting ATPase [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005388\|GO:0005524\|GO:0006816\|GO:0016020\|GO:0016887	GO:0008150_0.881\|GO:0005575_0.845\|GO:0110165_0.844\|GO:0071944_0.818\|GO:0016020_0.810\|GO:0005886_0.797\|GO:0009987_0.756\|GO:0003674_0.725\|GO:0051179_0.703\|GO:0006810_0.702\|GO:0051234_0.702\|GO:0005622_0.693\|GO:0005737_0.684\|GO:0043226_0.651\|GO:0043229_0.626\|GO:0043227_0.620\|GO:0055085_0.615\|GO:0043231_0.599\|GO:0005773_0.583\|GO:0006811_0.575\|GO:0012505_0.565\|GO:0005215_0.564\|GO:0022857_0.564\|GO:0003824_0.550\|GO:0006812_0.544\|GO:0034220_0.541\|GO:0030001_0.537\|GO:0098660_0.534\|GO:0098655_0.520\|GO:0098662_0.516\|GO:0015075_0.515	IPR001757+95-204_239-376_674-787+\|IPR004014+3-76_5-71+\|IPR005782+52-859+\|IPR006068+788-991+\|IPR008250+126-238+\|IPR018303+353-359+\|IPR023214+348-749+\|IPR023298+1-995+\|IPR023299+358-603_361-606+\|IPR036412+592-753+\|IPR044492+332-757+	SM00831+3-76+	PF00122+124-331+E1-E2_ATPase\|PF00689+788-991+Cation_transporting_ATPase,_C-terminus\|PF00690+5-71+Cation_transporter/ATPase,_N-terminus\|PF00702+593-718+haloacid_dehalogenase-like_hydrolase\|PF13246+423-532+Cation_transport_ATPase_(P-type)	G3DSA:1.20.1110.10:FF:000065+230-391_708-997+Sarcoplasmic/endoplasmic_reticulum_calcium_ATPase_1\|G3DSA:2.70.150.10:FF:000055+115-242+Calcium-transporting_ATPase\|G3DSA:3.40.1110.10:FF:000003+361-606+Calcium-transporting_ATPase\|G3DSA:3.40.50.1000:FF:000005+598-749+Calcium-transporting_ATPase_1	PTHR42861+8-1002+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1010	2voy_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.598	111318.130	4.893	-24.000	23.861	9.307	43.366	56.634	11.188	12.673	50.594

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	12297.703	17550.601	17917.935	12199.839	12381.297	15776.666	9800.414	17882.220	8009.897	8979.162	8563.763

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.199	-0.662	-0.446	—	0.364	-0.677	—	-0.726	—	—	—	—	—

No JSON data available for plots.

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