Hg_chrom5_TN10mRNA_10162
Organism: Heterodera glycines Gene Locus: chr5:5987087-5990485 Feature type: polypeptideProtein Sequence
Length: 779
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.896 | 0.597 | 1.05 | 0.31 | 1.754 | 1.777 | 0.642 | 1.155 | 2.139 | 0.729 | 1.148 | 0.982 | 0.891 | 0.938 | 1.336 | 0.752 | 0.8 | 1.011 | 0.494 | 0.453 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
20-55
|
0.977
|
— | — |
0.000
|
— | — |
0.351
|
0.080
|
0.003
|
0.819
|
0.185
|
0.125
|
0.246
|
0.045
|
0.163
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009740
|
1.000
|
1.000
|
Hsc_gene_25385.t1
|
Hsc_gene_25385.t1
|
— |
Q8VDJ3.1 Vigilin [Mus musculus]
|
KAI1719924.1 KH domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.856|GO:0110165_0.843|GO:0008150_0.802|GO:0016020_0.748|GO:0003674_0.742|GO:0005488_0.681|GO:0008152_0.674|GO:0071944_0.627|GO:0005886_0.616|GO:0097159_0.595|GO:0003676_0.569|GO:0003723_0.565|GO:0005515_0.564|GO:0044238_0.561|GO:0005622_0.502
|
IPR004087+122-190_194-262_267-335_336-400_426-494_498-566_570-638_642-710+|IPR004088+125-186_197-258_271-331_430-490_502-562_574-634_646-707+|IPR036612+113-190_117-195_190-265_191-265_263-334_266-333_318-399_334-417_421-494_423-498_492-570_495-567_564-642_568-640_636-714_641-713+
|
SM00322+122-190_194-262_267-335_336-400_426-494_498-566_570-638_642-710+
|
PF00013+125-186_197-258_271-331_430-490_502-562_574-634_646-707+KH_domain
|
— |
PTHR10627+238-453+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
395-439;761-779
|
2.000
|
1-394;440-760
|
2cte_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
88136.140
|
5.813
|
-8.000
|
32.734
|
7.702
|
52.375
|
47.625
|
16.431
|
16.303
|
44.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey60
|
6656.661
|
3626.989
|
4433.688
|
6166.277
|
7484.831
|
12379.126
|
9070.224
|
5975.882
|
9961.649
|
3225.276
|
6112.293
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.628
|
0.584
|
0.247
|
0.741
|
-0.438
|
-1.153
|
0.744
|
1.521
|
— | — | — | — |
No JSON data available for plots.