Hg_chrom5_TN10mRNA_10165
Organism: Heterodera glycines Gene Locus: chr5:5991146-5994311 Feature type: polypeptideProtein Sequence
Length: 638
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.784 | 1.166 | 0.655 | 0.595 | 1.228 | 1.809 | 0.485 | 1.411 | 0.94 | 1.186 | 0.926 | 1.383 | 1.306 | 1.176 | 1.663 | 0.828 | 0.797 | 1.069 | 0.241 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9564
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,RKAEWREIRRLIGKPRRC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.887
|
0.048
|
0.011
|
0.313
|
0.067
|
0.022
|
0.028
|
0.007
|
0.096
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002221
|
3.000
|
1.000
|
Hsc_gene_25384.t1
|
Hsc_gene_25384.t1;Hsc_gene_25384.t2
|
— |
P30630.3 Protein lin-9 [Caenorhabditis elegans]
|
KAI1727948.1 DIRP domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006351|GO:0017053
|
GO:0005575_0.724|GO:0110165_0.723|GO:0005622_0.671|GO:0016020_0.647|GO:0043226_0.622|GO:0043229_0.609|GO:0043227_0.563|GO:0043231_0.543|GO:0008150_0.519
|
IPR010561+56-633+|IPR033471+215-320_216-322+|IPR045831+360-633+
|
SM01135+216-322+
|
PF06584+215-320+DIRP|PF19438+360-633+LIN9_C-terminal
|
— |
PTHR21689+56-633+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-161
|
1.000
|
162-638
|
7n40_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.810
|
73430.060
|
9.758
|
30.000
|
28.056
|
10.972
|
50.784
|
49.216
|
17.085
|
10.972
|
44.984
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
blue
|
1551.459
|
963.094
|
845.332
|
892.758
|
1009.146
|
957.673
|
1447.897
|
1067.164
|
930.199
|
3396.337
|
2339.421
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.419
|
-0.246
|
0.188
|
0.145
|
— |
0.606
|
— |
0.583
|
-1.960
|
— | — | — | — |
No JSON data available for plots.