Hg_chrom5_TN10mRNA_10176
Organism: Heterodera glycines Gene Locus: chr5:6033940-6036716 Feature type: polypeptideProtein Sequence
Length: 416
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.146 | 0.727 | 1.224 | 0.829 | 1.963 | 0.986 | 0.601 | 1.322 | 0.908 | 1.007 | 1.093 | 1.131 | 1.335 | 0.786 | 1.913 | 0.652 | 0.473 | 0.692 | 1.109 | 0.636 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9574
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RRERATETLERRRNTK,RKKAEAMRAEEDRDARRER,KKAEAMRAEEDRDARRERA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.347
|
0.271
|
0.015
|
0.750
|
0.078
|
0.136
|
0.319
|
0.052
|
0.029
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009749
|
1.000
|
1.000
|
Hsc_gene_25374.t1
|
Hsc_gene_25373.t1;Hsc_gene_25374.t1
|
— | — |
KAH7701463.1 Protein C17G10.2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0051879
|
GO:0005575_0.862|GO:0110165_0.862|GO:0005622_0.814|GO:0043226_0.681|GO:0016020_0.655|GO:0005737_0.653|GO:0008150_0.648|GO:0043229_0.645|GO:0043227_0.570|GO:0043231_0.535
|
IPR011990+85-247_93-190+|IPR044059+290-350+
|
— |
PF18972+290-350+Cns1/TTC4_Wheel_domain
|
— |
PTHR46035+37-394+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-32
|
1.000
|
33-416
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
48102.230
|
6.165
|
-2.500
|
37.740
|
11.058
|
52.163
|
47.837
|
19.231
|
18.510
|
43.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1601.181
|
3238.271
|
2991.866
|
1453.666
|
1309.278
|
1128.990
|
1242.963
|
2117.465
|
864.100
|
1301.156
|
1113.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.344
|
-1.293
|
-0.932
|
-0.183
|
-0.199
|
— |
0.803
|
-0.626
|
— | — | — | — | — |
No JSON data available for plots.