SCN Proteipedia

Hg_chrom5_TN10mRNA_10177

Organism: Heterodera glycines Gene Locus: chr5:6037375-6039134 Feature type: polypeptide

Protein Sequence

Length: 322

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.614	0.65	1.355	0.857	0.932	1.115	0.739	0.776	1.656	1.511	1.082	2.192	1.294	0.956	1.268	0.71	0.56	0.894	0.956	1.005	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9575	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.987

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	KRKL	—	—	—	—	—	—	0.000	—	—	0.701	0.172	0.016	0.657	0.075	0.110	0.071	0.026	0.141	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009750	1.000	1.000	Hsc_gene_25372.t1	Hsc_gene_25372.t1	—	A8XA58.1 Cyclin-dependent kinase 1 [Caenorhabditis briggsae]	KAI1733281.1 protein kinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005524\|GO:0006468	GO:0008150_0.880\|GO:0009987_0.833\|GO:0005575_0.812\|GO:0003674_0.789\|GO:0065007_0.789\|GO:0110165_0.785\|GO:0050789_0.781\|GO:0050794_0.766\|GO:0003824_0.743\|GO:0016740_0.733\|GO:0005622_0.731\|GO:0140096_0.695\|GO:0016772_0.672\|GO:0016301_0.636\|GO:0016773_0.635\|GO:0004672_0.618\|GO:0005488_0.587\|GO:0050896_0.584\|GO:0005737_0.583\|GO:0007049_0.583\|GO:0005515_0.571\|GO:0004674_0.551\|GO:0071840_0.545\|GO:0008152_0.543\|GO:0016043_0.542\|GO:0044238_0.532\|GO:0051716_0.532\|GO:0051726_0.532\|GO:0016020_0.528\|GO:0043170_0.513\|GO:0022402_0.503	IPR000719+13-299_14-299+\|IPR008271+133-145+\|IPR011009+9-303+\|IPR017441+19-42+\|IPR050108+13-299+	SM00220+13-299+	PF00069+14-299+Protein_kinase_domain	G3DSA:1.10.510.10:FF:000706+94-307+Cyclin-dependent_kinase_1\|G3DSA:3.30.200.20:FF:000375+9-93+Cell_division_related_protein_kinase_2	PTHR24056+13-299+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-322	9skq_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.602	36911.040	7.563	3.500	27.950	10.870	43.478	56.522	14.907	13.043	43.478

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	purple	653.711	120.847	144.223	779.856	1206.797	1243.415	1606.740	522.248	8.329	744.692	429.108

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	2.554	2.543	0.598	—	0.380	-1.366	1.768	-6.673	6.855	—	—	—

No JSON data available for plots.

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