Hg_chrom5_TN10mRNA_10178
Organism: Heterodera glycines Gene Locus: chr5:6039411-6042060 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 0.925 | 0.386 | 1.006 | 1.724 | 0.544 | 1.042 | 1.061 | 0.825 | 1.183 | 0.723 | 0.78 | 1.4 | 1.326 | 1.678 | 1.213 | 0.913 | 1.125 | 0.408 | 0.546 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9576
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
lysosome_vacuole
|
— |
RRISELLLEVKGRAR,RRTTKNVVERVRLKKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.399
|
0.179
|
0.030
|
0.423
|
0.137
|
0.445
|
0.440
|
0.003
|
0.436
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009751
|
1.000
|
1.000
|
Hsc_gene_25371.t1
|
Hsc_gene_25371.t1
|
— |
O45782.2 Arrestin domain-containing protein 17 [Caenorhabditis elegans]
|
KHN80611.1 Arrestin domain-containing protein 2 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.744|GO:0110165_0.742|GO:0003674_0.716|GO:0008150_0.684|GO:0009987_0.630|GO:0005488_0.613|GO:0005622_0.613|GO:0005515_0.564|GO:0065007_0.558|GO:0050789_0.540|GO:0050794_0.526|GO:0016020_0.512|GO:0043226_0.503
|
IPR011021+15-199+|IPR011022+223-354_225-354+|IPR014752+11-200_205-351+|IPR014756+14-206_208-359+|IPR050357+14-360+
|
SM01017+223-354+
|
PF00339+15-199+Arrestin_(or_S-antigen),_N-terminal_domain|PF02752+225-354+Arrestin_(or_S-antigen),_C-terminal_domain
|
— |
PTHR11188+14-360+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
78-145;358-377
|
2.000
|
1-77;146-357
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
41820.570
|
7.768
|
6.000
|
27.586
|
9.549
|
47.745
|
52.255
|
15.119
|
12.467
|
51.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
746.661
|
2799.989
|
2571.257
|
728.886
|
210.032
|
269.561
|
82.588
|
653.097
|
339.392
|
268.819
|
299.065
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.353
|
-2.079
|
-1.710
|
-1.827
|
0.375
|
-1.696
|
1.175
|
-2.841
|
— | — | — | — | — |
No JSON data available for plots.