Hg_chrom5_TN10mRNA_10180
Organism: Heterodera glycines Gene Locus: chr5:6044800-6046785 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 0.837 | 1.308 | 1.24 | 1.079 | 1.384 | 1.028 | 0.899 | 1.199 | 0.972 | 1.09 | 1.058 | 1.099 | 0.346 | 1.248 | 0.565 | 0.944 | 1.145 | 1.66 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9578
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
REIKRKK,KRKKVGTMRAGGANGGDAAGANGKRKAKR
|
— | — | — | — | — | — |
0.005
|
— | — |
0.223
|
0.282
|
0.021
|
0.340
|
0.409
|
0.368
|
0.505
|
0.030
|
0.769
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009753
|
1.000
|
1.000
|
Hsc_gene_25369.t1
|
Hsc_gene_25369.t1;Hsc_gene_25369.t2
|
— |
P48555.2 Ras-related protein Ral-a [Drosophila melanogaster]
|
AVA09637.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0007165|GO:0016020
|
GO:0008150_0.884|GO:0009987_0.801|GO:0005575_0.800|GO:0110165_0.800|GO:0065007_0.669|GO:0003674_0.657|GO:0050789_0.650|GO:0050794_0.637|GO:0005622_0.621|GO:0050896_0.552|GO:0016020_0.550|GO:0071944_0.526|GO:0051716_0.508
|
IPR001806+75-278_81-242_82-244+|IPR005225+81-235+|IPR020849+80-245+|IPR027417+75-248_76-246+
|
SM00173+77-244+|SM00174+82-244+|SM00175+80-244+
|
PF00071+81-242+Ras_family
|
G3DSA:3.40.50.300:FF:000203+73-250+Putative_ras-related_protein_ral-a
|
PTHR24070+80-245+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
6zrn_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
31213.510
|
6.906
|
1.500
|
28.777
|
10.432
|
47.482
|
52.518
|
15.108
|
13.669
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
3577.525
|
4917.074
|
3617.371
|
2393.875
|
2709.198
|
3937.570
|
2897.635
|
4660.492
|
5491.218
|
2108.302
|
3558.123
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.672
|
-1.175
|
-0.487
|
0.147
|
0.554
|
-0.433
|
— |
-0.546
|
1.260
|
-1.037
|
— | — | — |
No JSON data available for plots.