SCN Proteipedia

Hg_chrom5_TN10mRNA_10182

Organism: Heterodera glycines Gene Locus: chr5:6052463-6053222 Feature type: polypeptide

Protein Sequence

Length: 104

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.342	0.671	1.399	1.326	0.962	3.205	0.229	1.442	0.427	1.169	1.02	4.525	0.0	0.0	1.177	0.824	0.946	0.874	0.0	0.848	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9580	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.282	0.830	0.057	0.353	0.097	0.236	0.572	0.076	0.094	0.301

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009755	1.000	1.000	Hsc_gene_25367.t1	Hsc_gene_25367.t1	—	Q9Y0V6.1 Mitochondrial import inner membrane translocase subunit Tim10 [Caenorhabditis elegans]	KAF7639049.1 zf-Tim10_DDP domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.934\|GO:0005575_0.825\|GO:0110165_0.815\|GO:0009987_0.781\|GO:0005622_0.745\|GO:0016020_0.688\|GO:0043226_0.685\|GO:0043229_0.661\|GO:0071840_0.649\|GO:0016043_0.647\|GO:0005737_0.639\|GO:0051179_0.623\|GO:0043227_0.619\|GO:0043231_0.607\|GO:0051641_0.606\|GO:0051234_0.605\|GO:0006810_0.603\|GO:0006996_0.596\|GO:0051649_0.588\|GO:0008104_0.581\|GO:0033036_0.581\|GO:0070727_0.581\|GO:0061024_0.579\|GO:0045184_0.572\|GO:0071705_0.570\|GO:0015031_0.566\|GO:0046907_0.566\|GO:0033365_0.563\|GO:0006886_0.560\|GO:0007005_0.559\|GO:0051668_0.559\|GO:0006605_0.558\|GO:0006626_0.558\|GO:0070585_0.558\|GO:0072594_0.558\|GO:0072655_0.558\|GO:0072657_0.557\|GO:0005739_0.555\|GO:0007006_0.555\|GO:0007007_0.555\|GO:0090150_0.555\|GO:0006839_0.551\|GO:0045039_0.551\|GO:0090151_0.551\|GO:0032991_0.521\|GO:0050789_0.508\|GO:0065007_0.508	IPR004217+14-76+\|IPR035427+7-96_19-81+	—	PF02953+14-76+Tim10/DDP_family_zinc_finger	G3DSA:1.10.287.810:FF:000002+8-99+Mitochondrial_import_inner_membrane_translocase_subunit_tim10	PTHR11038+7-81+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;76-104	1.000	2-75	7cgp_O	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.777	11854.520	6.694	0.500	28.846	5.769	55.769	44.231	15.385	13.462	45.192

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	lightcyan	560.113	450.611	525.609	597.749	653.392	492.939	511.467	434.982	395.421	778.899	614.551

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.271	0.295	—	-0.392	—	-0.285	0.379	—	—	—	—	—

No JSON data available for plots.

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