SCN Proteipedia

Hg_chrom5_TN10mRNA_10183

Organism: Heterodera glycines Gene Locus: chr5:6053296-6054073 Feature type: polypeptide

Protein Sequence

Length: 152

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.688	0.612	1.077	1.134	0.877	1.181	0.94	1.645	0.877	1.422	2.293	0.774	1.096	0.38	1.074	0.47	0.863	1.196	0.0	0.774	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9581	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKQYTGPKKQKHVRKKVKL,GGKKRKKKQYTGPKKQKHVRKKVK	—	—	—	—	—	—	0.000	—	—	0.776	0.146	0.045	0.420	0.272	0.049	0.040	0.001	0.035	0.158

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009756	1.000	1.000	Hsc_gene_25366.t1	Hsc_gene_25366.t1	—	P68202.2 Ubiquitin-ribosomal protein eS31 fusion protein [Plutella xylostella]	XP_040168530.1 ubiquitin-40S ribosomal protein S27a [Anopheles arabiensis];XP_040239510.1 ubiquitin-40S ribosomal protein S27a [Anopheles coluzzii];XP_041779940.1 ubiquitin-40S ribosomal protein S27a [Anopheles merus];XP_049288037.1 ubiquitin-40S ribosomal protein S27a [Anopheles funestus];XP_049464570.1 ubiquitin-40S ribosomal protein S27a [Anopheles coluzzii];XP_052897900.1 ubiquitin-40S ribosomal protein S27a isoform X2 [Anopheles moucheti];XP_053664412.1 ubiquitin-40S ribosomal protein S27a [Anopheles marshallii];XP_058125880.1 ubiquitin-ribosomal protein eS31 fusion protein [Anopheles coustani];XP_058167769.1 ubiquitin-ribosomal protein eS31 fusion protein [Anopheles ziemanni];XP_061518763.1 ubiquitin-ribosomal protein eS31 fusion protein [Anopheles gambiae];KFB48180.1 ubiquitin (ribosomal protein L40) [Anopheles sinensis]	No	0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003735\|GO:0005515\|GO:0005840\|GO:0006412	GO:0005575_0.897\|GO:0110165_0.895\|GO:0005622_0.862\|GO:0043226_0.825\|GO:0043229_0.823\|GO:0016020_0.665\|GO:0005737_0.654\|GO:0043227_0.646\|GO:0043231_0.635\|GO:0003674_0.564\|GO:0043228_0.526\|GO:0043232_0.526\|GO:0005829_0.507	IPR000626+1-75_2-71+\|IPR002906+101-147+\|IPR011332+99-151+\|IPR019954+26-51+\|IPR019956+31-51_52-73+\|IPR029071+2-94+\|IPR038582+79-150+\|IPR050158+1-109+	SM00213+2-71+\|SM01402+101-147+	PF00240+2-71+Ubiquitin_family\|PF01599+101-147+Ribosomal_protein_S27a	—	PTHR10666+1-109+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-152	8q87_AC	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.751	17176.130	10.304	16.500	34.868	9.868	50.658	49.342	23.684	11.184	44.079

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	sienna3	9897.457	3189.029	7318.069	10216.915	9669.300	8256.884	8667.479	4298.462	16670.475	11442.466	13683.041

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.970	1.543	0.590	-0.112	-0.212	—	-1.050	1.156	—	—	—	—	—

No JSON data available for plots.

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